KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130100861
Entry
130100861         CDS       T09701                                 
Symbol
exosc4
Name
(RefSeq) exosome complex component RRP41
  KO
K11600  exosome complex component RRP41
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130100861 (exosc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rkg03019]
    130100861 (exosc4)
Messenger RNA biogenesis [BR:rkg03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     130100861 (exosc4)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     130100861 (exosc4)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 130100861
NCBI-ProteinID: XP_056122477
LinkDB
Position
Unknown
AA seq 245 aa
MAGLELLSDQGYRLDGRKAPELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHETRG
SRSKSLHDRAVINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQ
IDIYVKILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTALADLCHAEESG
GGTALALALLPRSGNIALLQMDARLHQDHLDALMEAAITACKGLSKVLDGVVRQHLEEVS
VLTSD
NT seq 738 nt   +upstreamnt  +downstreamnt
atggcgggtctcgagttgctgtcggatcagggataccggctggacggacggaaagcgccc
gagctgcgcaaagtgcaggcccgcatgagtgtgttcgcccaggccgacgggtccgcttac
ctggagcagggcaacaccaaagccctggcggtggtgtacgggccacacgagacgcgaggc
tctcgcagtaagtcgctgcacgatcgagcggtcatcaactgccagtacagcatggccacg
ttcagcacggcggagaggaagaggcgtccgcacggggaccgcaagtccagcgagatgagc
ctgcacctcaagcagaccttcgaggccgcggtgctgaccgagctctacccgcgctcgcag
atcgacatctacgtcaagatcctgcaggcggacggagggaactacagcgcgtgtgtgaac
gccgcgactctggcgctggtggacgctggcatccccatgcgggattacgtgtgcgcctgc
agcgctggcttcgtggaggacacggccctggcggacctgtgtcacgcggaggagagcgga
ggcggcacggctctggccctggcgctgctgccccgcagcgggaacatcgccctgctgcag
atggacgcccggctccaccaggaccacctggacgcgctgatggaggccgccatcaccgca
tgcaaaggcctcagcaaagtgctggacggcgttgtgcgtcagcatctggaggaggtttcg
gttcttaccagcgattga

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