Rhinichthys klamathensis goyatoka (western speckled dace): 130101201
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Entry
130101201 CDS
T09701
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03022
Basal transcription factors
rkg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130101201 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
130101201 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130101201 (ercc3)
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130101201 (ercc3)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130101201 (ercc3)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130101201 (ercc3)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130101201 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
130101201
NCBI-ProteinID:
XP_056122776
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MGKKDKSDRDKKSKKRYYDEEEEDEELVGSESQEAIPAAAGKQVEESSTKLDEYGAKDYR
LQMLLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAISEPVCRPIHAHEYKLTAYS
LYAAVSVGLQTSDIIEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKMVLKHNRYFVESAFP
DVIQRLLQDPVIRDCRLRSADGEETELITEVISSKSAISKSQQDNGGPSTSQPADEQRSG
TQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEEIQKRCIQLEYPLLAEYDFRNDT
VNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRC
LVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSW
EAERVMEWMKSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLN
FLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILFYTMNPNKF
RACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPK
INTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYS
LVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSRDEQQQLLHKVLAASD
LDAEEEVVIGEVGGKLQFSRRMGTMSSMSGADDAVYMEYQASRSSKASGIKNIHPLFKRF
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaaagataagagtgatcgagataagaagtccaagaagcgttattatgatgag
gaagaggaggatgaagagctggtaggcagtgagtctcaggaggccattccagcagctgct
gggaagcaggtggaggaatccagcactaaactggatgaatatggagccaaagactacaga
ctacagatgcttctcaagaacgaccattcttcacgacccctttgggtggctcctgatggt
cacatcttcctagaggctttctctcccgtgtataaatacgctcaggacttcctggtggcg
atatcagagccagtgtgcagacccattcatgcgcacgagtacaagctgacggcctattct
ctctacgccgccgtgagcgtcggcctgcagacctctgacatcattgagtacctgcagaaa
ctcagcaagacctctgtgcctgatggcatagtgcaatttattaagctgtgcacagtaagc
tacggtaaagtcaaaatggtcctgaaacacaacaggtattttgtggagagtgcgttccct
gatgtcattcagaggctgttacaggaccctgtgattcgggactgccgtcttcggtccgct
gatggtgaggagactgagctcatcactgaggtcatctctagcaaatcagcaatctcaaag
tctcagcaggacaatggtggtccatccacctcccagcctgcagatgagcagcgctcagga
actcaggtgccagaggacatcttcagttactacgaacagatggataaagaggaggaggag
gaggaagagacgcaaacagtgtcatttgagatccgtcaggaaatgattgaggaaattcag
aagcgctgcattcagttggagtatccccttctggcagaatacgacttccgtaatgacacg
gtgaaccctgacattaacatggacctgaagcccaccgctgtgctgagaccataccaggag
aagagtctgaggaagatgtttgggaacggtagagctcgatctggagtcatcgtcctgcct
tgcggtgctggtaagtcactggtaggcgtcactgctgcctgcacagtgcgtaagcgctgc
ctggtgttgggaaactcctctgtgtcagtggaacagtggaaggctcagtttaagatgtgg
tccaccattgatgactcccagatctgccgtttcacttcagacgctaaggacaaacccatc
ggctgctcagtggccatcagcacctactctatgctgggccacaccaccaaacgctcatgg
gaagctgagagggtcatggagtggatgaaaagtcaagagtgggggcttattattctggat
gaggtgcacacaatcccagcaaagatgttccgtcgtgttctgacgattgtccaggctcat
tgtaaactgggtctcactgccacactagtgagagaggacgataagattgtcgatcttaac
ttcctgatcgggccgaagctctttgaggccaattggatggaactacagaacaatggttac
attgctaaagtccagtgtgctgaggtatggtgtcccatgtctcccgagttttatcgtgaa
tatgtggccataaagacgaagaagagaattctgttctacaccatgaatcccaacaagttc
cgtgcatgtcagttcctgatccgcttccacgagcggaggaacgacaagatcatcgtcttt
gccgacaacgtctttgctctgaaagaatacgccatccgtctgaacaaaccgtatatttat
ggacccacatctcaaggagaacgtatgcagatccttcaaaactttaaacacaatcccaaa
atcaataccatcttcatctccaaggtaggagatacttcatttgacctgccggaggcaaac
gtgctcatccagatctcctctcacggcggttcccgtcgtcaggaagctcagagactgggc
agagtcctgcgagccaagaaaggtatggttgcggaggaatacaatgcttatttctactcg
ctcgtctctcaggacacacaggaaatggcttattccaccaagagacagcgcttcctggtg
gaccagggttacagtttcaaggtgatcacaaagttggctgggatggaggaggaagacttg
atgttttcctctcgtgatgaacagcagcagctcttgcacaaggttctggcagcatctgat
cttgacgcagaagaggaagtggtgataggagaagtgggagggaagctgcagttttctcgc
cgtatgggaactatgagctccatgtctggtgcagacgacgcagtctacatggaataccag
gcgtcccgcagtagcaaggcttcgggaatcaagaacatccatccactgtttaaacgcttc
cgcaagtga
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integrated database retrieval system
