Rhinichthys klamathensis goyatoka (western speckled dace): 130101427
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Entry
130101427 CDS
T09701
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130101427 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130101427 (si:ch211-266g18.9)
Membrane trafficking [BR:
rkg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130101427 (si:ch211-266g18.9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
130101427
NCBI-ProteinID:
XP_056123118
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All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
MKVFTPVLVFQKIPSGRGRDKSSIQCLECFGKNLYIGTKEGLIEYITVNSVSGEESLSVR
EVGKRQMGRSGAIGQLTAVPFLNHLLVLWDGSVTALNMFSLEPIPALKKIQNVSLFYVSE
SVVQTDSVELIAASAKRKIVSVYKVCVDRWECVRQVALPQEPVVLAAHGTCLCVATCDRY
LLHDYQSQTTLDLFQHNLGKQNIIANKCGKGEFILNGPGNLGMFVMKNGTSQHPPVQWPD
GVVDAAVHFPYVLALQNQTVHIYSILDQQLKQTVLLQSAKSLVSTEESVFVVADKEIHRL
SPIPLEDQIQELVKRQRVDEALTLLDRVQDLLPKDSYKDLHKNVICTSGMIQFYREAFVE
AKELFIKGELDPREIISLYPAMPVVSEDFTPQTTAVSNAKDLWTLSRDDWPTFQQYLSFL
DDFLREVRPTGQGQICPRDIDSALFKLYLEQAEYEKLDQLVSSQNDCNLQMCVPDLEQHK
RFFTLGLLYQSQGQHFNAIQTWVKIVEDQSEDPLHISVFQHIVNTLSNLKHKPIIWKFVD
WVLQRDQEAGILIFTKMHASSHIMFAPEEVLTILTNYAVAMILYLEFLVNELHSKEEKHH
AMLSSSYVKWILQSIEADYSNETSREEMRHKLQMLLWQSSLYNAETIYEQITSSSLHVEK
AILLGKSGKHKKALQVLVYEEKDQQAAVSYCWRTSAGRDGKFTQGMFLTLLQIYLESTHH
VIAAVDLLNQNAASFDLVSVLRVLPGSWSLKLVLRFLCESMRGTVHDKRMRGLEMSLAKV
ETLRHKHAWMEATHEKIRVDRGCVCHSCQKRLTGPEFLRRPAGELTHISCHGGESGH
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtctttactcctgtgctagtcttccaaaaaataccctcagggagaggcagagac
aaatccagtattcaatgtttggagtgttttggcaaaaacctctatattgggaccaaagag
ggactcatcgagtacatcactgtaaatagcgtgagcggtgaagaaagcctttcagtacgg
gaggtggggaagagacagatgggccggagcggagcgatcggccagctgacggcggtccct
tttctgaaccatctcttagttctctgggatggttcagtcacggcgcttaacatgttctcc
ctggaacccattcctgccctgaagaaaatccagaacgtgtcactcttctatgtcagtgag
tcagtggttcagactgattcagtcgagctcattgcagcttcagccaagaggaaaatagtg
agcgtttataaggtgtgtgtggacagatgggagtgcgtgagacaggtggctctgccgcag
gagcctgtggttctggctgcgcatgggacatgtctgtgtgtggccacttgtgacagatat
ttgctccatgattatcagagccaaaccaccttagatcttttccaacataacctgggaaaa
caaaatatcattgccaacaaatgtggaaaaggagaattcattttaaatgggcctggaaat
ttgggcatgtttgtgatgaagaatggtacttcccagcatcctcctgtacagtggcctgat
ggagtggtggacgctgcagtgcatttcccatatgtgctggctctacaaaatcagactgtt
catatctacagcattctggaccaacagctgaagcaaactgtccttttacaaagtgccaaa
tctctcgtatcaacagaagaaagtgttttcgttgttgctgacaaagagattcaccggctg
tcaccaattccgctggaggatcagattcaagagctggttaagagacagcgagttgatgaa
gccctgacactgctggacagggttcaagatctcttgccaaaggattcgtataaggatcta
cataaaaatgtcatctgtacatctggaatgatacagttctacagagaggcttttgtggag
gcaaaggagctttttattaaaggtgaattagacccaagggaaatcattagcctttatcca
gctatgcctgttgtgagtgaagactttacacctcagacaacagcagtcagcaatgccaag
gacctgtggacgttaagtcgagacgactggccgacatttcagcaatacctaagctttttg
gatgacttcttgagagaagtcaggccaacaggacagggccaaatatgtcctcgggacatt
gactctgcgctctttaagctgtatttggaacaagcagaatatgaaaaactggaccagctt
gtgtcgtcgcagaatgactgtaatctccaaatgtgtgtgcctgacttggagcaacacaaa
aggtttttcacacttggattgctctatcaaagccaaggccagcatttcaatgcaattcag
acctgggttaaaattgtggaggaccagagcgaagaccccttacacatcagtgtcttccag
catatagttaatactctctcaaatctgaaacataaacccatcatctggaagtttgtagac
tgggttcttcagagagaccaagaggctggaatactgatctttacaaagatgcatgcaagc
agccacattatgtttgcaccggaggaagtccttaccattctcaccaactacgcagttgcc
atgattctttacttggaatttttagtcaatgaattacacagcaaggaggaaaagcatcac
gccatgctcagctcatcatacgtcaaatggatactgcagtcaatcgaggctgactacagt
aatgaaaccagcagggaagagatgagacataaactacagatgttactctggcaatcttct
ttatataatgctgagactatatatgagcaaataacatcctcgtctcttcatgtggagaaa
gcaattttgcttgggaaatctggtaaacacaaaaaggccctgcaggttttggtctatgaa
gaaaaagaccagcaggctgctgtaagctactgttggaggacctctgctggacgagacggg
aagttcacacagggaatgttcctcaccctgcttcaaatctacctcgagtccactcatcat
gtgatcgcagccgtggacctgctgaaccaaaatgcagcgtcttttgatttagtcagcgtg
ttgagggtgctgccgggctcctggtctctcaaactggtcctgcggttcctgtgtgaatca
atgagaggaacggtgcatgacaaacgaatgagaggtctggagatgagcctagccaaggtg
gaaactctaagacacaagcatgcctggatggaagcaacgcatgaaaaaatcagagttgac
agaggatgtgtttgccattcatgccagaaacgtctaacagggcccgagttcctgcgcagg
ccggcaggagagctgacacacatttcctgtcacggtggtgaaagcggtcactga
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