Rhinichthys klamathensis goyatoka (western speckled dace): 130101455
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Entry
130101455 CDS
T09701
Symbol
hmbox1a
Name
(RefSeq) homeobox-containing protein 1a isoform X1
KO
K24885
homeobox-containing protein 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130101455 (hmbox1a)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
130101455 (hmbox1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
HTH_31
DUF494
HTH_37
CUT
HTH_24
NOC3p
HTH_26
Motif
Other DBs
NCBI-GeneID:
130101455
NCBI-ProteinID:
XP_056123156
LinkDB
All DBs
Position
Unknown
AA seq
447 aa
AA seq
DB search
MSHYTDEPRFTIEQIDLLQRLRRSGMTKQEILHALETLDRLDREHVEKFGYRHAHGGSAT
AVVNHGNSSNATTSSNSCTTSTNNLTASSSTTSTATQTGYRGNGLSPSPSNSYDTSPPPT
VPTPMPVVAPMVQNGRDGLAAMPNGKLSPPRFTVSNTSSRAFAFEHPDEEVDIDDRVEEL
MRMDSAIIKEEIKAFLGNRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWY
QLEKTTPGATLAMRPTPMALEDIVEWRQTPPPISSTQGSFRLRRGSRFTWRKECLAVMES
YFNDNQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIE
AAILESHGIDVQSPGGHSNSDEIDGNDYGEQVAADQVLGMDDNTGPIEHQDPIALAVEMA
AVNHTILALARQGGAASDIKTEVLDDE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtcccattatacagatgagcctcgttttaccattgagcagatcgacttgctgcagcgg
ctacgtcgaagcggcatgacaaagcaagagatcttgcacgccctggaaaccctcgaccgg
ctggaccgcgagcacgtggagaagttcggctaccggcacgcccatggcggaagcgcgacg
gccgtagtcaaccacggcaacagcagcaacgccaccacctcttccaactcctgcactacc
tccactaacaacctcacagcctcttcttcaacgacctctacggccacacagaccggttac
cgcggcaatggcctctcaccatctcctagcaacagctatgacacctccccgcccccgacg
gtccccacccccatgccggtagtagcacccatggtccaaaacggacgggacggccttgcc
gctatgcctaacgggaagctctccccgccccgcttcactgttagcaacacctcctcgagg
gccttcgcgttcgagcatccggatgaggaagtggacatcgatgacagagtcgaggagctc
atgagaatggacagtgctataattaaagaagagattaaagcattcttggggaatcggcga
atatcacaggcagtagttgcccaagttacaggtatcagtcagagccggatctctcattgg
ctgctccagcagggctcagacctcagcgagcagaagaaaagagccttctaccgctggtac
caactagagaaaactacacctggtgcaacactagcgatgcggcccaccccgatggccctg
gaggacattgtggagtggcgtcaaacaccccctcccattagcagcacccagggcagcttc
cgtctgcggcgtggaagccgcttcacctggaggaaagagtgtctggcggtcatggagagt
tatttcaacgacaaccagtaccccgacgaagccaaacgagaggaaattgccaacgcctgc
aatgcagttattcaaaaaccagggaagaagctttcagatcttgagagggtcacgtctctg
aaagtttacaactggtttgccaacagacggaaggaaattaagagaagagccaacatagaa
gcagcaatcctggagagtcatgggattgatgtccaaagcccaggaggacattccaacagc
gatgagatcgatggaaatgactacggtgagcaagtagctgctgaccaagttttgggaatg
gacgacaacaccggcccaatagaacaccaggaccccatagctttggcagtggagatggcc
gctgtcaatcacaccatcctggctctggcgaggcagggaggagctgccagtgacatcaag
acagaggtgctggatgacgagtga
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