Rhinichthys klamathensis goyatoka (western speckled dace): 130102271
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Entry
130102271 CDS
T09701
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03320
PPAR signaling pathway
rkg04148
Efferocytosis
rkg04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130102271 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
130102271 (rxraa)
03320 PPAR signaling pathway
130102271 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130102271 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
rkg03310
]
130102271 (rxraa)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
130102271 (rxraa)
Nuclear receptors [BR:
rkg03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
130102271 (rxraa)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
CRT10
Motif
Other DBs
NCBI-GeneID:
130102271
NCBI-ProteinID:
XP_056124230
LinkDB
All DBs
Position
Unknown
AA seq
503 aa
AA seq
DB search
MDPFCLDIHMGFLKPQCSIPPPPQRGRAEACTCFSGMCALHQRRLSTDSSGHVTSSPLSS
PTSHRGMHPSLLSPTSLGHSGSLHSPISTLSSPMNGLGSPFSVISSPMGPHSMGSPGMGY
GHSVSPQLNSPMNSVSSSEDIKPPLGINGVMKVPAQPSCTPLSLTKHICAICGDRSSGKH
YGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRYQKCLAMGMKREVLL
HTAVQEERQRAKERNENEVESTSSVNEDMPVEKILEAELAVEPKTETYIETNVPIPSDSP
NDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSITVK
DGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK
GLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL
IGDTPIDTFLMEMLEAPHQMTMT
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggatcccttctgccttgatatacacatggggttcctgaagccccagtgctcaatacca
ccaccgcctcagagaggacgagcagaagcatgtacgtgtttcagcggaatgtgtgctctt
catcagcgcagactttctacagactcctcaggacatgtgacgtcctctcctctcagctcg
cccacgtcccaccgagggatgcatccgtcactgctcagcccgacttctttaggccactcg
gggtccctgcattcccccatcagcactctgagctcgcccatgaacggcctgggctctccc
ttctctgtcatcagctcgcccatggggccacattccatggggtcaccagggatgggttac
ggccacagcgtcagcccacagctgaactcgcccatgaactctgtcagcagctcagaagat
atcaagccgcccctgggcatcaacggtgtgatgaaggtgccagcccagccctcgtgcacc
cccctctccctcaccaaacacatctgtgccatctgcggcgaccgctcctcaggtaaacac
tacggtgtgtacagctgcgagggatgcaagggtttcttcaagaggactgtgcgtaaggac
ctgacctacacttgtcgagacaacaaggactgtatgatcgacaaacgccagcgcaaccgc
tgtcagtactgccgctatcagaagtgtttggccatgggcatgaagagagaagtattgtta
catacagccgtccaggaggagcgccagcgagccaaggaacgcaacgagaacgaggtggag
tcgaccagcagcgtgaatgaagacatgcccgtggagaagatcctggaagcagagcttgcc
gtggagcccaaaacagagacttacattgagaccaatgtacctataccttcagattcaccc
aatgatccagtcacaaacatctgtcaggccgcagacaagcagctcttcactctagtggaa
tgggccaagaggatcccgcatttttctgagctcccgctggacgaccaggtcattcttcta
agagcaggatggaatgagctcctcattgcgtcattttcacatcgttcgataacagtgaag
gacgggatactgttggccacgggattacacgtgcaccggaacagcgcccacagtgccgga
gtaggagccatatttgacagggtgctgacagagttggtgtcaaagatgagagacatgcag
atggataaaacagagctagggtgccttcgagccatcgtcctttttaacccagactccaaa
ggcctgtcgaaccctggtgaggtggaggcgctgagagagaaggtctatgcctctctggaa
gcctactgcaaacagaagtaccctgaacaacctggaaggtttgctaagctgttgctgcgg
ctccctgccctgcgttccattggactgaagtgtttggagcatctgttcttcttcaagctc
ataggggacacacccatcgacaccttcctcatggagatgctagaggcgccccaccaaatg
acaatgacataa
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