Rhinichthys klamathensis goyatoka (western speckled dace): 130102340
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Entry
130102340 CDS
T09701
Symbol
rxrba
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03320
PPAR signaling pathway
rkg04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
130102340 (rxrba)
03320 PPAR signaling pathway
130102340 (rxrba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130102340 (rxrba)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
rkg03310
]
130102340 (rxrba)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
130102340 (rxrba)
Nuclear receptors [BR:
rkg03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
130102340 (rxrba)
BRITE hierarchy
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Ortholog
Paralog
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Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
C1_2
Motif
Other DBs
NCBI-GeneID:
130102340
NCBI-ProteinID:
XP_056124324
LinkDB
All DBs
Position
Unknown
AA seq
480 aa
AA seq
DB search
MGDSRDSRSPDSSSVSSPPSGQRSPPLAPSAASMTSLPPITSAVNSPISSMGSPFSVISS
SLGSPCLPGTPSVGYGPISSPQMNMFPRNIEINSTVSMSGLHAVSSSDDVKPPFGLKPLS
SHSPGPMLSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDK
RQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKEREGEVESTSAANEEMPVEK
ILEAEMAVEQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELSLDD
QVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEV
GAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEA
YCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacagcagagattctcgtagtccagacagttcatccgtttcctcaccaccatca
ggtcagcgttcgcccccgttggccccttcagccgcctccatgacttctctgccacccatc
acttcagccgtgaacagtcccatcagcagcatgggctcacctttctcagtcatcagctcc
tctctgggttctccttgccttcctggaactccctctgtaggctacggccccatcagcagc
ccacagatgaacatgtttcccagaaacatagagatcaactccactgtgtctatgtcgggc
ctgcatgccgtcagcagctctgatgacgtgaaaccacccttcggtttgaagcccctctcc
agccacagcccaggacccatgctctcacagaagcgtctgtgtgccatctgtggggatcgc
tcctctggcaagcactatggcgtgtacagctgcgagggctgcaagggctttttcaagcgc
accgtgaggaaggacctgagctacacatgcagagacaataaggactgtctggtggacaaa
cgccagaggaaccgctgccagtactgccgctaccagaagtgcctggccatggggatgaag
agagaggtggtccaagatgaacgtcaacgatcagttcaggaggagcgtcagaggaacaag
gagcgggaaggagaggtggagtccaccagcgctgcgaatgaagagatgccagtggagaag
attctggaagcagaaatggccgtggagcagaagactgagctgcatgcggatggcagctca
ggtggaagctctccgaacgacccagtcacaaatatctgccaggcagctgataaacagctg
ttcactttggtggagtgggcaaagaggattcctcacttcagtgagctgtctctggatgac
caggtcattctactgcgtgctggctggaatgagctattgatcgcatcattctctcatcgc
tccatcacggtgaaggatggcattctgctggccactggcctccatgtgcacaggaacagt
gctcacagtgctggggtgggagccatctttgacagggagagtgcgcacaatgcagaggtt
ggggccatattcgacagggtgctgacggagctggtgagcaagatgagagacatgcagatg
gataaaacagagttgggctgcctgagagccatcatcctcttcaacccagatgcaaaggga
ttgtcaagcccaagtgaagtggagttactgagagagaaggtctatgcatcgctggaggct
tattgtaaacagagatatcctgaccagcaggggaggtttgccaagctcctactccggctc
ccagcgcttcgctccattggcttaaaatgcttggagcacctgttcttcttcaagctgatt
ggagacaccccaatcgacaccttcttaatggaaatgcttgaagcgcctcatcagctgacc
taa
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