Rhinichthys klamathensis goyatoka (western speckled dace): 130102393
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Entry
130102393 CDS
T09701
Symbol
snx27a
Name
(RefSeq) sorting nexin-27a
KO
K17936
sorting nexin-27
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130102393 (snx27a)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rkg04990
]
130102393 (snx27a)
Membrane trafficking [BR:
rkg04131
]
Protein recycling
Others
Others
130102393 (snx27a)
Domain-containing proteins not elsewhere classified [BR:
rkg04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
130102393 (snx27a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
RA_2
SNX17_FERM_C
USP7_C2
SNX17-31_F2_FERM
PDZ_2
RBD
RA_3
Motif
Other DBs
NCBI-GeneID:
130102393
NCBI-ProteinID:
XP_056124394
LinkDB
All DBs
Position
Unknown
AA seq
567 aa
AA seq
DB search
MAESEGDETARPAPPSLLPTAPRVNGSGMLGSGSQTPTLVTSGPRVVRIIKSESGYGFNV
RGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGIVKGDRILEVNRVSVEGATHKQV
VDLIRAGERELVLTVLSVPPQEGDGLDAGEESAVQPSYDYSDKQAVPISVPTYKHVEQHS
EKFVAYNVYMSGRQMCSKRYREFAILHQNLKREFSSYTFPKLPGKWPFSLSEQQLDARRR
GLEEYMERVCSVRIIGESDIMQEFLSESNENHNTITDVELRIALPDKTTASVRVRKNSTT
DQVYQALVMKVGMDSMMASYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTV
RKWLFSTQEEELLRDNPLALHYCFHQAQDDVKKGFIKAEDKAYQLQKLAEQRKMTTYLSL
LRSCEGYNELTFPHCACDSRRKGHVITAISMKHFKLHACTEDGTLENQVIVFEWSEMQRW
DTDEEGMAFCFEYVRGEKKPRWVKIFTPYFNYMHECFERIFCELKWRKEVEEEASDKGNK
NCSNNDYISPLEQQKGWRHLGGEIATS
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaagcgaaggagatgagactgctcggcccgctcctccgtcactgctgcccaca
gcgccccgcgttaacggatcggggatgctcggttctggtagccagaccccgaccttggtg
acttcgggtccgcgcgtggttcggataataaagtcagaatctggatacggattcaacgtc
cgcggtcaagtgagtgaaggcggccaactgcggagcattaacggggagctgtacgctcct
ctccagcatgtaagcgccgtgctacccggtggtgcggcggaccgggccggtatcgtgaaa
ggagacagaatactagaggttaaccgggtgagcgtggagggggcgacgcacaagcaggta
gtggacctgatccgggccggagagagggagctggtgttgaccgtgctctctgtcccgcca
caggaaggggacggactcgatgccggagaagaaagtgctgtgcagcccagttacgactac
agcgacaagcaggccgtccccatttcagtccccacatacaaacatgtggaacagcactcc
gagaagtttgtggcgtataacgtctacatgtcgggcagacagatgtgctcgaagcgttac
cgggagttcgcaatacttcatcagaacctgaagagagagttttccagctacactttcccg
aaactgcctgggaagtggcccttctctctgtctgaacaacagctggacgctcgcaggaga
ggattggaggaatacatggagagagtctgctcagtgcggatcataggtgagagtgacatt
atgcaagaattcctgtctgaatcaaacgagaaccacaacaccataacagatgtcgagtta
cggatagcgctgcctgataaaactacagcttcagtgagagtccgaaagaatagcaccact
gaccaggtttaccaggctcttgtcatgaaggttgggatggacagcatgatggccagttac
tttgctctcttcgaagttattaaccactcatttgtgcgcaaattggctcctaatgagttt
ccgcacaagctgtatgttcagaactacacgtcagctgtccctgggacgtgtctcacggtg
cgcaagtggctcttcagcacacaggaagaggaactgctgcgggacaacccactggccctg
cactactgcttccatcaggcacaggatgatgtgaagaagggattcattaaagcagaggat
aaagcgtaccagctccagaaactagcagaacagagaaagatgacaacgtatctgagtctt
ttgcgctcatgtgagggatataacgagttgactttccctcactgtgcatgtgactcacgg
aggaaaggtcatgtgatcacggccatcagcatgaagcatttcaaactacacgcctgcaca
gaggacggcactcttgagaatcaggtgattgtgttcgaatggtcagagatgcaaagatgg
gacacagatgaggagggaatggccttctgctttgagtatgtgcggggagaaaagaaacct
cgttgggtcaaaatattcactccttattttaactacatgcacgagtgctttgagaggatt
ttctgtgagctcaaatggaggaaagaggttgaagaggaggcctcagacaaaggcaataag
aactgtagtaataatgattacatctcgccgctggagcaacagaagggatggcgccaccta
gggggcgagattgccacttcctaa
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