Rhinichthys klamathensis goyatoka (western speckled dace): 130102727
Help
Entry
130102727 CDS
T09701
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130102727 (sox6)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130102727 (sox6)
BRITE hierarchy
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
130102727
NCBI-ProteinID:
XP_056124705
LinkDB
All DBs
Position
Unknown
AA seq
815 aa
AA seq
DB search
MPSSSEVVCEEQRRTGAAKQAEGDSIRIMSSKQATSPFASTPDGGEDGLNQERMSWEKEE
NSESLVAPQLPLHNLLHNKPPLEELQAISSSVPPESDWESLMSAQQRMESDSNKVCSLYS
FRNNSTSPHKPEEGARERGDLLSSSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEHDES
SCMEKLLSKDWKEKMERLNTGELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHD
EQKKLAASQMEKQRQQMELARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMI
PIFPHDQRTLAAAAAAQQGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLNPLQLQQLY
AAQLASMQVSPGAKMPPLPQPPNSAGQISPSGLKNEKRSSTPLAQVKEEGTQPLNLSARP
KTADSVKSPTSPTQILFPGSKSSPNSLSKSGGIPSPIGGMGRGSSLDILSSLNSTALFGD
QDAVMKAIQEARKMREQIQREQLQHHQQGMEAKLSALASMGLNNCRADKERSHYDSLGHH
LGKLGEDGKIGHRVIDLTRPEDFDGCRELNGSADKPHQYYCWPTGGASTTEARVYREPRG
RNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQEKQPYYEE
QARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFTVGQQPQT
QIPITTSAGVVYPGAITMATTTPSPHMTSDCSSASASPEPTIPVIQSTFNMKMEPGTMVP
SDPVNGEDEMDMYEDFEDEPKSDYSSDTQEPVSAN
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgccatccagctctgaagtggtgtgtgaagaacagagaaggacaggagcggccaaacag
gctgagggagacagtatcagaatcatgtcttccaagcaagccacttctccatttgcctcg
acccctgacggaggtgaggatggattgaatcaggagcgcatgtcctgggagaaggaagag
aactctgagtcgctagtcgcccctcagctgcccctgcacaatctgctccacaacaaacct
cccctggaggagcttcaggcaatcagcagcagcgtgccgcccgaatccgactgggagagc
ctgatgtcggcccagcagcgcatggaatcggacagcaataaagtatgttccttatactcc
ttccggaataactctacctctccacacaaaccagaggagggggccagggagcgcggcgac
ctgctgagcagctcagccttcggaacgccagagcgccgcaaaggaagcctggccgatgtg
gtggacacactgaaacagaagaaactagaggagatgacaaagacagagcatgacgaatcc
tcctgcatggagaaactcctttctaaagactggaaagaaaagatggagcgactcaacaca
ggcgagctgttaggagaaattaaaggtactccagaaagtcttgcagagaaggagcgacag
ctctccaccatgatcacacagctcatcagcctgcgcgagcagctcctggccgcccatgat
gagcagaagaaactggccgcctcgcagatggagaaacaacgtcagcaaatggagctggca
cgccaacagcaagagcagattgccagacaacagcagcaacttctgcagcaacagcacaaa
atcaatctcctccagcagcagatccagcaggtccagggtcacatgcctccactcatgatc
cccatttttccacacgaccagcgcactctggcagcggccgctgcagcccagcagggcttc
ctcttccccccaggcatgtcctataagccaggtgataactacccggtgcagttcattcca
tccacaatggcagctgctgccgcgtcaggactcaaccctctgcagctccagcaactctac
gccgcccagctggccagcatgcaggtctctccaggagccaagatgcctccgctgccccag
ccccccaattctgccgggcaaatctccccgtctggcttgaagaacgagaagaggtcctca
acccccctggctcaagtcaaggaggagggaacacagcctctcaacctctctgcccggccc
aagacagctgattctgtcaaatcccccacatccccgacacagatcctctttccaggcagc
aagagcagcccgaacagcctgtccaagagcggaggcatccccagtcccatcggaggaatg
ggtcgtggctcttctctagacattctgtccagcctgaactcaacagcgttgtttggagat
caggatgcggtgatgaaggccatccaggaagcaaggaagatgagggagcagatacagaga
gagcagcttcagcatcatcagcagggaatggaggccaagctgtctgcccttgccagcatg
ggcctgaacaactgcagggctgataaggagaggtctcattatgacagccttggccatcac
ctgggcaaactaggcgaggatggaaagatcggtcacagagtcatcgacctcaccaggcca
gaggatttcgacgggtgtagggaactgaatggctctgcagataaaccacatcagtattat
tgttggccaacaggaggcgccagcactaccgaggcacgggtctacagggaaccccgggga
aggaacagcaacgaacctcacatcaaacggcccatgaacgccttcatggtctgggccaaa
gatgagcgccgcaaaatccttcaggccttcccagacatgcacaactccaacatcagcaaa
atcttgggatctcgctggaagtccatgacgaaccaggagaaacaaccgtattatgaagag
caggcacggctcagcaagatccacctggagaagtatcccaactacaagtacaagcccagg
cccaagcgcacctgcatcatcgacggcaagaagctgcgcatcggcgagtacaagcagatg
atgaggtcgaggaggcaggagatgaggcagttcttcactgtggggcagcagccacagacg
cagatccccatcaccaccagcgcaggtgtcgtttaccccggtgccataaccatggcgacc
actacgccctcccctcacatgacgtcagactgttccagtgcctcggccagccctgagccc
accatccccgtcatccagagcaccttcaacatgaagatggaaccaggcaccatggtgcct
agtgacccagtgaacggagaggacgagatggacatgtacgaggactttgaggacgagccc
aaatcggactacagcagtgacacacaggagccggtcagtgccaactga
DBGET
integrated database retrieval system
