KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130102859
Entry
130102859         CDS       T09701                                 
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03040  Spliceosome
rkg04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130102859 (prpf19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130102859 (prpf19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rkg03041]
    130102859 (prpf19)
   04121 Ubiquitin system [BR:rkg04121]
    130102859 (prpf19)
   03400 DNA repair and recombination proteins [BR:rkg03400]
    130102859 (prpf19)
Enzymes [BR:rkg01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     130102859 (prpf19)
Spliceosome [BR:rkg03041]
 Complex B
  Other components
   Prp19 complex
    130102859 (prpf19)
 Complex C
   Prp19-CDC5 complex
    130102859 (prpf19)
Ubiquitin system [BR:rkg04121]
 Ubiquitin ligases (E3)
  U-box type E3
   130102859 (prpf19)
DNA repair and recombination proteins [BR:rkg03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    130102859 (prpf19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Prp19 Beta-prop_WDR3_2nd WDR55 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_Aladin NBCH_WD40 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_IFT122_1st PEP5_VPS11_N WDR90_beta-prop_4th Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_Nup120_160 Beta-prop_DCAF4 U-box Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Tricorn_2nd Cytochrom_D1 zf-Nse ATG16 Cep57_MT_bd
Other DBs
NCBI-GeneID: 130102859
NCBI-ProteinID: XP_056124934
LinkDB
Position
Unknown
AA seq 505 aa
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPINGQPLSEEQLIDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAAPASQPAAVGAGGEAMEVSEQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILSLDLCPTDTNKVLT
GGADKNVVVFDRREEQIVATLKGHTKKVSSVIYHPGQSVVFSASPDSTIRVWSVTGGNCV
QVIRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDVQTGRVLTKVTDETAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTAIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYVCKQWSEVLNFSDHSGLVT
GVAFGEHAQFLASTGMDRSLKFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtctttggtttgtgcgatttccaacgaggtgccggagcacccctgtgtgtctcctgtc
tccaaccaagtgttcgagaggcgtctgatcgagaagtacatcgctgagaacggagccgac
cccatcaacggccagcctctgtccgaagagcagctcatcgacatcaaggtgtctcacccc
atccggccgaaggctccctctgccaccagcatccctgccatcctcaaatccctgcaggac
gagtgggacgcagtgatgctgcacagcttcaccctgagacagcagcttcagacgacccga
caggagctgtcccacgctctctaccagcacgacgccgcctgcagggtcatcgcacgcctc
accaaagaggtcaccgctgcccgagaggctctggccacgctcaagcctcaggctggactg
gtggctcctcaggcggctcctgcttcccagccggcagctgtgggagccggcggagaggcc
atggaggtcagtgaacaggtgggcatgaccccggagatcatacagaagctccaagacaag
gccaccgtcctgaccaccgagagaaagaagagaggaaagaccgtgccggaggagctggtc
agagcagaggatctcagcaagtatcgtcaagtggcgtcccatgctggtcttcacagtgcc
agtgtgccaggaatcctctctctggatctctgcccaacagacaccaacaaagtcctcacc
ggtggtgcggataagaacgtggtggtgtttgaccggcgagaggagcagattgtcgccacc
ctcaaaggacacactaaaaaggtctcgtccgtcatctaccaccccggtcagtcggtggtg
ttctcggcgtctccggacagcacgatccgcgtgtggtcggtcactgggggaaactgtgtg
caggtcatcagggcccacgaggcaggagtcaccggcctctctctgcacgccactggagac
tatctgctgagctcctctgaggaccagtattgggccttctctgatgtgcagactggacgt
gtgctgactaaagtcactgatgagactgctggatgtgcgctgacctgtgctcagtttcat
cccgacggcctgatcttcggcaccggcacagccgactcgcagattaagatctgggatctg
aaggaacggaccaatgtggcgaacttccccggacactcgggtcccgtgacggccatcgcc
ttctctgagaacggctactacctggccaccggtgctcaggacagctcactcaagctgtgg
gatctgaggaaactcaagaacttcaagaccatcactttggacaacaattatgaggtgaag
tctctggtgttcgaccagagtgggacatatctggcggtgggcggctcggacatcagggtg
tacgtctgcaagcagtggtccgaggtgctcaacttctctgatcactctggcctggtgacc
ggcgtggcgttcggagaacacgctcagttcctggcctccaccggcatggacagaagtctc
aagttctacagcctgtga

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