Rhinichthys klamathensis goyatoka (western speckled dace): 130103123
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Entry
130103123 CDS
T09701
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130103123 (ddx1)
03016 Transfer RNA biogenesis [BR:
rkg03016
]
130103123 (ddx1)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130103123 (ddx1)
Spliceosome [BR:
rkg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130103123 (ddx1)
Transfer RNA biogenesis [BR:
rkg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130103123 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
130103123
NCBI-ProteinID:
XP_056125297
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAYGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQLEGKKGRSAVKAGGAVFNKWQMNPYDRSPAFAIGADGLCCQSREFKEWH
GCRSTKGVTKGRYYYEVTCHDQGLCRVGWSSAQASLDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDVDKGHVSFSKNGNDLGLAFEIPQQLKNQPFFASCVLKNAELKF
NFGDEPLKNQPKDGYVALNQASDGHVVKSSQTGSAKVSQVKSSSNAPKALIIEPSKELAE
QTLNNVNQFKKHVDNPKLRELLIIGGVAAKEQLSVLESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLSAGYTDFIMRVYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKNDRLWEKLGKSHIRTDEVHAKDDTRPGAN
TAEMWSEAIKILKGEYAIRAIKEHKMDQAIIFCRTKIDCDNMEEHFIKQGGGPDKKGHQL
SCVCLHGDRKPNERKYNLERFKKQEVKFLICTDVAARGIDIRGVPYVINVTLPDEKQNYV
HRIGRVGRADRMGLAISLVAMEKEKVWYHVCASRGKGCYNTRLKESGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRATGGGLYKGHVDILAPTVQELANLER
EAQTSFLQLSYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcttatggcgaaatgggagtaatgcctgaaattgcacaggcggtggaagaaatg
gactggctgttgccaacagacattcaggccgaatccatcccgttgattctgggtggagga
gacgtgcttatggctgctgagactgggagtggaaaaactggagccttcagtattccagtc
atccaaatagtctatgagacccttaaagaccagctggaggggaagaagggacgcagtgct
gtgaaggcaggaggagcagttttcaataaatggcagatgaacccctatgacagaagtcca
gcatttgctattggtgctgatggcctgtgctgtcagagcagagagttcaaagaatggcat
ggctgtcgttcaaccaaaggagtcacaaaagggaggtattattatgaagtgacctgtcac
gatcaagggctgtgtagggtgggctggtcttctgcccaggcatcactggacttgggaacg
gataaatatggatttggcttcgggggaactggaaagaaatctcacaataagcagtttgac
agttatggagaggaattcactatgcacgacaccatcggatgctacatagatgtggataaa
ggccatgtgtcattctctaaaaatggtaatgatctgggtttggcttttgagattcctcag
cagctgaaaaaccagcccttctttgcttcctgtgtgctgaagaatgctgaactgaaattc
aactttggcgatgaacctttaaaaaaccaacctaaagatggatatgtggccctaaaccag
gcttcagatggtcatgtggttaaatccagccagacagggagtgctaaagtgagtcaggtc
aaatccagttctaacgcccccaaagctctcatcattgagccgtctaaagagctggctgaa
caaaccctcaataatgtcaaccagttcaagaaacatgttgacaatcccaaactaagggaa
cttctgataattggtggagtggctgctaaagaacagctctccgttttagaaagcggggtt
gacattgtggttgggaccccaggaagactggatgatctcatatccacaggaaagctggat
ctatcccaagtccgcttcctggtgctggatgagtgtgatggacttctctcagctggctac
acagactttatcatgagggtctacaaccagatccctcaggtgacctcagacggcaagaga
ctacaggtgattgtttgctctgccacgctgcactcattcgatgtaaagaagctctcagag
aagatcatgcatttccccacatgggtggatctgaagggagaagattcggtaccagaaacg
gtccatcacgtggtggtgccagtcaacccaaaaaatgacaggctttgggagaaactggga
aagagccacatcaggacggatgaagttcatgccaaggatgacacacgacctggagccaac
accgcagagatgtggtcagaggccattaagattctgaagggagagtatgcgatcagagcc
attaaggagcataagatggatcaggccatcatcttctgcaggacaaagatcgactgcgac
aatatggaggagcacttcatcaagcagggaggaggtccagacaagaaaggacaccagtta
tcttgtgtctgtcttcatggtgaccggaaaccaaatgagcgcaaatataacttggagcga
ttcaagaaacaggaagtgaagtttctgatttgcacagatgtggcagctagaggaatcgat
atccgtggtgttccttatgtgataaacgtgactctgccggatgagaagcagaactatgtt
catcgcattggaagagttggcagagcggacaggatgggtttggctatatccctggttgca
atggagaaagagaaagtgtggtaccacgtttgtgccagcagagggaaaggctgctacaac
accagactcaaagagagcggaggatgcactatttggtacaacgagaaagagttgttgtca
gaaatcgaggagcatctgaaatgtaccattactcagtgtgaacctgacatcaaagtacct
gttgatgaatttgacggcaaagtgacgtacgggcagcgcagggctacggggggtggtctc
tataagggccatgtggatatattggcgccgaccgtacaggaactggccaacctggagaga
gaggcacaaacttccttccttcaactcagctatctgcccaaccagctctttaaagcattc
tag
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