Rhinichthys klamathensis goyatoka (western speckled dace): 130103478
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Entry
130103478 CDS
T09701
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130103478
04121 Ubiquitin system [BR:
rkg04121
]
130103478
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
130103478
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
130103478
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZBED1_RNase-like_helical
ZBED1_RNase-like
Dimer_Tnp_hAT
zf-BED
FAM200-ZBED5_RNase-like
DUF8247
DUF659
DBD_Tnp_Hermes
DUF3134
Motif
Other DBs
NCBI-GeneID:
130103478
NCBI-ProteinID:
XP_056125705
LinkDB
All DBs
Position
Unknown
AA seq
676 aa
AA seq
DB search
MASNAFNGPEIEDPPITNRSGVWVHFGFPVSYDGDGKRVVDKKTTVCRICYMTIGHTNGN
TSNMSTHLRRHHPSVSVSGTRRKQAETYMTQSIPAAFRQAFPTDSNRAKQITAAIGTFIA
ADMRPYSVVENAGFKNMLNVIEPRYTIPSRAHFSQTVIPALYQKTKAQIENQLAKATAVA
LTTDGWMSRATQSYLTVTAHYITAEWELKSHVLQTRPLDSHTSEDLAKGITEAVEVWKLE
RANLTIPVTTDNARNIVNAVVGAAGLGPQIGCFAHVINLASQKAMAVQQISRLLAKIRKI
VTFFHRSTTAAHVLKTKQELLQLPVHKLIQDIPTRWNSSYDMIERYIEQQAAVYSAMTDK
AVKKNVKDIMTLSENDMRLAENVITVLKPLKTVTTLMCTESSPSASMVLPMKMMILKSME
LSDDDSPAVRGVKTAIKNDLQQRYTLPDLQDYLHKSTALDPRFKSLQHLDATTRLRVYEA
LTTEIVTEQATSTTEPATSIETVDLEPSTSPPREKKSAMTELFGGMFMTHHHDSSPKSVA
KLAEEEMKLYMVDSIPLDADPLKWWKNHEHLYPHFARLAQRYLAVPGTSVPSERFLGHIW
PGTQPALSQICLTVPVSGLTEGTDWMMDWMQSHQRWMDREAGDGDHDDDEVQVQVMMTGN
AGKCSEDTDEGGEVPV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatgcgtttaacggaccagaaatagaagatcctccaataaccaacagatct
ggtgtttgggtccactttggtttccctgtaagctatgatggtgatggcaagagagtggtg
gataaaaaaacaacggtatgtcgcatctgctacatgacaatagggcacaccaacgggaat
acttcaaacatgtcaactcatttacgacgacatcaccccagtgtgtcagtatccggaaca
agacgaaaacaagcagaaacatacatgacacaatctatccccgcagcatttagacaggca
tttccaactgattcaaacagggcaaaacagatcaccgcggcgattggtacatttatagcc
gcggatatgagaccttactctgtagtggaaaacgcaggttttaagaacatgcttaatgta
attgagccccgttacactattccctcgcgagcccatttcagccagactgtaattcctgct
ttgtaccaaaaaacaaaagcccaaatagaaaaccaattggccaaagcaacagccgttgct
ctgacaacagacggctggatgtcaagggctacacaaagctacctgactgtaacggcacat
tacattaccgctgaatgggaactgaaaagccacgttcttcagacacgcccccttgatagt
cacacgagtgaggatttggccaaagggataacagaagcagtggaagtgtggaagttggag
agagctaatctaactattcctgtgactactgacaatgccaggaatatagttaatgctgtt
gttggagctgctggacttgggccacaaatagggtgctttgcccatgtcattaatctagca
tctcagaaagcaatggcagtgcagcagatctctcgtctcctagcaaagatcagaaagatt
gtgaccttttttcacagaagcacaacagcagcccatgtgttgaagacaaaacaggagttg
ctgcagcttcctgttcacaaactcatccaagatataccaactagatggaattcaagctat
gatatgatagaaagatatattgaacagcaggctgcagtgtattctgcaatgacagacaaa
gctgtgaagaaaaatgttaaagacattatgactttgtctgaaaacgacatgcgactggct
gagaatgttatcacagttttgaaacccttgaaaactgtgacaacccttatgtgcaccgag
tcctctccatctgcgtccatggtccttcctatgaaaatgatgatcctgaaatccatggaa
ctgtctgatgatgacagcccagcagtgaggggtgtcaaaacagccatcaaaaatgacctg
cagcagcgatacacgttacctgatcttcaagattacctacacaagagcacagctttagat
ccacgttttaaatcactgcaacacttggatgctaccactcgcctgagagtctatgaagct
ctaaccacagagattgtgactgagcaagctacgagcaccacagagccagcaacctccata
gagacagtggacttggagccctcaacatcacctccacgagaaaagaaatcagccatgact
gagctttttggaggaatgttcatgacccatcatcatgattcaagccccaaatctgtggcc
aaattggcagaggaggagatgaaattgtacatggtggactctattcccctggatgcagat
ccactaaaatggtggaaaaaccatgagcacttataccctcattttgccaggttggcacag
cgttacttggctgtgcctggaacctctgtccctagcgagaggtttctgggccacatctgg
cccgggacccagccggctctcagccagatctgtcttacagtgcctgtgtcagggctcaca
gaaggaacagactggatgatggattggatgcagtcacatcaaagatggatggatcgggaa
gcaggtgacggtgatcatgatgatgatgaggtgcaggtgcaggtgatgatgaccgggaat
gctgggaagtgtagtgaagacacagatgaaggaggtgaggttccagtctga
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