Rhinichthys klamathensis goyatoka (western speckled dace): 130103946
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Entry
130103946 CDS
T09701
Symbol
pcdh10b
Name
(RefSeq) protocadherin-10b isoform X1
KO
K16499
protocadherin delta 2
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130103946 (pcdh10b)
Cell adhesion molecules [BR:
rkg04515
]
Cadherins
Protocadherins
130103946 (pcdh10b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
TMEM154
Motif
Other DBs
NCBI-GeneID:
130103946
NCBI-ProteinID:
XP_056126275
LinkDB
All DBs
Position
Unknown
AA seq
1025 aa
AA seq
DB search
MFVFLLLLCLADGVVSQIRYSVPEEAEHGTFVGNIAEDLGLDLTKLSSRRFQVVPSSRTP
YLEVNLENGVLFVNEKIDRERICKQSASCLLHLEVFLENPLELFRVEIEVVDINDNPPSF
PETDITVEISESATPGTRFPLESAFDPDVGSNALRTYDITNNNYFYLDVQTQTDGNKFAE
LVLEKPLDREQQAMHRYVLTAVDGGQPPRTGTALLVVRVLDSNDNVPVFDQPVYSVNLAE
NVPVGTLVIQLNATDSDEGPNGEVIYSFSNHISSRVKELFDIDARTGRIEVRGEVDFEES
SLYQIYVQAKDMGPNAVPAHCKVLVKVADVNDNAPEIIFSTVTESVSENAATGTVIALLS
VTDKDSEDNGQTHVEILGDVPFKLKTSFRNYYTIVTDGPLNRETVEAYTVTVVARDKGTP
SLATSKSIKVHVSDENDNAPTFTQPIYDVYVTENNVPGAYIYAVSAVDPDVGQNAYITYS
IVECEIQGMSVVTYVSINSENGYLYALRSFDYEQLKDFSFIVQARDSGSPELWSNATVNV
IIVDQNDNAPSVIAPIGKNGTAREPLPRSAEPGYLVTRIVAMDADDGENARLSYSIQRGN
ENGMFRMDWRTGELRTARRVSVKRDPQQLYELLIEVRDHGQPPMSCSAAVQVTLVDSLVE
GHSGERGTAKAKDASLDLTLILIIALGSVSFIFLLAMIVLAVRCQKEKKLNIYSTCLASD
CCCLVGCGSGGCCGRQARAARKKKKLSKSDIMLVQSTNTANVSVASAAQVPVEESGSFGS
LHQSQNYCYQVCLTPESAKTDLMFLKACSPSRSNDTEHNPCGALVTGYTDQQQPDIISNG
SLLSSETKHQRAELSYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDAMHRGHS
SGADLFSNCTEECKALGHSDRCWMPSFVPTDARQGADYRSNLHVPGMDSVPDSEVFEGET
LAGDQSFSTFGKETPHHPNQMHQHQHQHHQHHLNASTLERKEFDALLCNSRMPYKAACLS
RKRIC
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtgtttttgctcctgctgtgtctcgcggatggggtggtttcgcagatacgttac
tctgtgcccgaggaagcggagcatggcacgtttgtggggaatatagcagaggatttggga
ctggaccttacaaaactttcatcccgccgctttcaggtggtgcccagctcgcggacgccg
tacctggaagtaaacttggaaaacggagtgcttttcgtgaacgagaaaatcgaccgggag
cgcatctgtaagcagagtgccagctgtttgcttcacctggaggtgttcctggagaaccca
ctcgagctctttcgcgtggagatagaggtggtggacatcaacgacaacccgccgagcttt
ccggagacggacattaccgtggaaatatccgagagcgcgaccccgggtacgcgcttccct
ttggagagcgcttttgatccggatgtcggtagtaacgcattgcgcacttacgacatcacc
aataacaactatttctacctagacgtgcaaacacagactgatggcaataaattcgcagag
ctggttttggagaagcctcttgatcgggaacaacaggcgatgcaccgttatgtcctcaca
gccgtagacggtggccagcctcctcgtacaggtacagcactgcttgtggtcagggtgctc
gactccaacgacaacgtccccgtgtttgatcagccggtgtactcggttaacctggccgag
aacgtgcccgtgggcacgctcgtcatccagctgaacgcgaccgactcagacgagggcccg
aacggagaagtcatttactcgttcagcaaccacatttcaagcagggtcaaggaactgttc
gatatcgatgcaagaacgggccgtatagaggtcagaggtgaggtggactttgaggagagc
agtctgtatcagatttacgttcaagcgaaagacatgggacctaatgctgtgcccgcgcac
tgtaaagttttggtcaaagtggcggacgtgaacgacaacgctccagagatcatcttcagc
accgtcacggagtcggtgagcgagaacgcagccacgggcaccgttatcgctctgctcagc
gtcaccgataaagactctgaagacaacggtcagacgcatgtggagattctcggagatgtt
ccttttaaactcaaaacctcttttagaaattattacactattgtgaccgacggtcctctc
aaccgagagactgtagaggcatacacggtcaccgtggttgcgagagataaagggactcca
tctctggcgaccagcaaatcaatcaaagtgcacgtgtctgatgagaacgacaacgcgccc
acgtttacgcagcccatttatgatgtgtatgtgactgaaaacaacgtccccggtgcttac
atctacgctgtcagtgcagtagaccctgatgtcggacagaatgcttatataacttactcc
atagtggagtgtgaaatccagggaatgtctgtggtcacgtatgtgtccatcaactcggag
aatgggtatttgtacgcccttagatcatttgattatgagcaactgaaagacttcagcttt
atagttcaagcgagggactcaggcagccccgaactttggtccaacgccacggtgaacgtc
attatagttgatcagaatgataacgcgccgtctgtgattgcgcctattggaaaaaatggc
actgcgcgggagcctttgccgcgctctgccgagccaggctacctagttacgcgcattgtc
gccatggatgcagatgatggagagaacgcgcgcttgtcctacagtatacagagaggtaat
gagaatgggatgttccgaatggactggcgcactggcgagttgcgcacggcccgccgggtg
tcagtcaaacgagacccgcaacagctgtatgagctgctgattgaggtaagggatcacggg
cagcctcccatgtcatgcagcgcagcggtccaggttacgctcgtggacagtctcgtggaa
ggccacagtggagaacgaggtactgccaaggccaaagacgcgtctctggacttgacgctc
atcctcatcatcgcgctcggctccgtttccttcatcttcctcctggctatgattgtgctg
gccgtgcgctgtcaaaaggagaaaaagctgaacatctacagcacctgcctggccagcgac
tgctgctgcctggtgggctgcgggtcaggtggctgctgcggtcgacaggcccgggctgcc
cggaaaaagaaaaaactgagcaagtccgacatcatgctggttcagagcaccaacacagca
aacgtgagcgtggcgagcgccgcgcaggtgccagtggaggagtcagggagcttcggctcg
ctacatcaaagtcagaactactgctatcaggtctgtctgactccggaatcggccaaaacg
gatctcatgttcctgaaggcctgcagcccgtcgcgcagcaacgacaccgagcacaacccg
tgcggagctctagtgaccggctatacggaccaacagcagccggacatcatatccaacggc
agcctgctttccagtgagacaaaacaccagagagcagaactcagttatttggtggaccga
ccaaggcgtgttaacagctctgcatttcaggaggcagatatcgtgagctcaaaagacagc
ggtcatggagacagtgagcagggagacagtgaccatgacgccatgcatcgtggacattcc
tctggagcagacctgttttccaactgcacagaggagtgcaaagccctcggccactcagat
cgctgctggatgccaagtttcgtgcccaccgatgcacgacagggtgccgattaccgcagc
aacctgcacgtgccgggcatggactctgtgcccgactctgaggtatttgagggcgagacg
ttggcgggtgatcagtcattctcaacctttggcaaagagacgccacaccaccccaaccag
atgcaccaacaccaacatcaacaccatcaacatcacctcaatgcttccacgctagagagg
aaagagttcgatgcacttctgtgtaactcgcgcatgccttacaaagccgcctgtctgtcg
cggaaaaggatatgctag
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