Rhinichthys klamathensis goyatoka (western speckled dace): 130104130
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Entry
130104130 CDS
T09701
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rkg03036
]
130104130 (chd6)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
130104130 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
CHDCT2
DEAD
HTH_CHD1_Hrp3
HDA2-3
Chromo_MIT1
MUN
Motif
Other DBs
NCBI-GeneID:
130104130
NCBI-ProteinID:
XP_056126524
LinkDB
All DBs
Position
Unknown
AA seq
2961 aa
AA seq
DB search
MNPARAFDHRRRHKDQEKMKIQKKDKQMSATHVLKHTPSAAASNASDQNAQTTFPIGHLG
KEQLRIIGGPPNHCMTHTKAGSAASSHSLRPSSINSEEDDGGGGTRVKKKRRKKDKTESE
WNKDGESNAKPKRRVQKEGKEILPRKSKAVKEQKDHKREAKGQKEVKKVKKGQDVKVKPQ
PKNTATHPPSKRGRKPKEQGAMPPEKKKKGKRKSDAVLEMVESDDTASLSTLATGGEEST
DPMDNTKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRIAAMSSSTLAWQAEEPPE
DEANIIEKILSVRTVKKETSPDEAPEELEEFYVKYRNFSYLHCKWATLEELEKDPRIQQK
LKRFRNKQAQMKHIFTEPDEDLFNPDYIEVDRVLEIAITTDTETGEEVTHYLVKWCSLSY
EESTWELQEDVDPVKIREFEDLKKIPEIKLVERPLPEQWQKLEKSKEYRNGNQLREYQLE
GMNWLLFNWYNRKNCILADEMGLGKTIQSITFLFEIFYMGLRGPFLIIAPLSTITNWERE
FRTWTEMNVIVYHGSQISRQMILQYETYYRDEQGNIMTGQFKFHGVITTFEMIMADCPEL
KKINWRCVVIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPS
QFPSETTFLEEFGDLKTEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNIQ
KKYYRAILEKNFTFLAKGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILESFRKTYS
SDALDFQLQAMIQAAGKLVLIDKLLPKLLSGGHKVLVFSQMVRCLDILEDYLIQRRYTYE
RIDGRVRGNLRQAAIDRFSKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDL
QAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGVQQL
SKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIQTEGKGSTFAKASFV
SSGNRTDISLDDPNFWQKWAKIAELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELME
FSELDSDSEERPCRTRRLSDRNRRYLRAECFRVEKNLLIFGWGRWKDILNHGRFKWHLSE
RDMEVLCRALLVYCVRHYKGDDKIKSFIWDLITPTKDGHNQTLQNHSGLSAPVPRGRKGK
KLKNQLSPPELKNADWLVHCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKVEVLGEA
ANQALEEIPASKLEVTLPDIDYIEIPTIWWDSEADKSLLIGVHKHGYERYNAMRADPALC
FLERVGMPDVTALTVEQSGAETASDAPDSISKSDEIKEENDMKSEELEEKVEIKEEPMSE
ETGKNDTTVTGGFVASLAGDLITEMMEQGRIQWPAGSALTARLRRLITAYQRYTRREPLR
HDFLLHDGIAPVTWQIGEFRHCTTEPDPLFLEWQRRWTRREQADFYRTVSSFGVVYDPDK
KIFDWGQFRALARLERKTDESLERYFHSFVSMCRTACRLPPRKDEGTVDPSLFVEPITEE
RAARTLYRIELLRKVREQVLRHPLLGARLQLCRPSLYLPVWWECGKHDRDLLIGVAKHGL
SRTDFYILNDPQLSFLEAHRNYVHKENHRYPVPGLPHHHCCLYDANLVHCQSPQPPEYHH
TPSPHTPTQLVHTHGHHQPTEVVASEPGSSLGIGSGNREGFLDCPPLDDSLELGSLQHEG
LTSDTLHSKSGKEAFNGFPFNSATGGLNMLNSYGVQGELNGAQGDMADSIAGKLRSDVLV
GEQGSSEETGLMAPSVELDELQTPWESSDHVETSDMFNETDPILGAQALEPSFLDAPQPD
DGREGDETLTDCLSMPSSDSQSNPVEPLAPSFMLFKDLNVGEASVDQTDLSSSLPDYVPP
PLSLPDVSLDQADPISEDQEDKLSDSNITHGVPSPGEGAESIGFHFEKEDLSPDSLKTKD
SQDEIDKMPSIESPRDNCLEESQKGDCKVTFDDSNEGDLEESYEKPLRETEKVPLEESYD
LTCDETLQEPCEGFQQDSAEQQLVEEPSEEPCKEPSDPIEECNLTNTTLSTDYPLPPSLP
SSPTTLPDTSVSPVLDVVPKQEFLMDPVVSDVKPEPDSTTQTPHLEQTEVLDVKDKIKDE
DAKTSALLGDVDAPRFALPMCEMADSIHEIREPTIAQLLQEKALFSFSEWPKDRVIINRI
DSICHTILKGKWPSSSQQYESPSALANTCMPSSAHQRAGFLTTRMPISQSLNFNLPHAVP
HLPKERLVAPAFLSELKRPRRGFEFEAEVLAKPSHLGEKIQVGVSHRANALLLNGWQDAA
IDLSKPSELTVGGDSGPISHMSHTVQSAPHKITGIGSIQGSLGLDMAGILQAGLIHPVTG
QIVNGSLRRDDSMLRRRRGRRRNVETPDLGFMKGRAMNLPEQQCGSESISQPVVSSTSSQ
SECPPSTPTTLPTHPPANSPAPPPASETLNVSVDRDTANKGLMEWLRQNPNYNMELSAFP
SSQNASMLHSFLERPKQRRHRCKDPTKLDVSSLTGEERVPVVHRNTGRRLGGAMAPAIKE
LSRWLDANSEYSVAPDWADVVKHSGFLPEGKFARILTGPVCRDPGPRRRGRRPRSEMPKA
PELPAGMAPLFMNGGLIGSMDLVSLPNLRNVPGIPLTGIMGFPHGFATAVTSGDDAKNGL
GMLPMMLHGMAAVQPPMYSAHMSGMMSQSLSTATSTMSTVTASTTASVTTNSATVTSTSS
PPDSSDTALQRDNTGSPMSTENWIKEEAKQGGEEKKVSASVSTAAATSSSSSSCITSTGS
HLTFNPFLIPGMSHSLLYPHMFLPPGSIMALPAMPAADSTGSPKRKRKKVREEGLVEGNG
NGGVQMDGEESKGVKVEQTPERKSQEGVMEEDGHDVNLALVKDSSDHIQDPSEDKSTEEK
EKNKTGEEPEQDSQGPCDGGD
NT seq
8886 nt
NT seq
+upstream
nt +downstream
nt
atgaatccagcgcgtgctttcgatcacagacgcagacacaaagatcaagaaaaaatgaaa
atacaaaagaaggacaagcagatgtctgccacccatgtactaaagcacactccatccgct
gctgcctcgaatgcctctgaccaaaacgcacaaactacatttcccatcggccacttgggc
aaagaacagttacggattatcggagggccgcccaatcattgcatgactcacacaaaggct
gggtctgcggccagcagtcacagtctccgcccttcatcaatcaacagtgaggaggatgat
ggagggggcgggaccagggtgaagaagaaacgaaggaaaaaagacaagactgagtcggag
tggaacaaagatggagaaagcaacgctaaaccaaagagaagggtgcaaaaggaagggaag
gagattcttccgagaaagtcaaaggcggtgaaggaacaaaaggatcataagagggaggcg
aaaggtcaaaaggaggtcaaaaaggtcaagaaaggtcaagatgtgaaagtgaaaccacag
cccaagaacactgcaacacatccgccctccaaaagagggaggaagccaaaagagcagggt
gccatgcctccggagaagaagaagaagggaaagaggaaaagtgatgctgtacttgagatg
gtggagagtgatgacacagcctctctcagcacgctcgccaccggcggtgaggaaagcacc
gaccctatggataacactaagaggcgatcagggcgtcaagtgaagcggcggaagtacaac
gaagatcttgatttcaaggtcgtggatgatgacggggagaccattgccgtgttgggcgcg
ggccgaattgctgccatgtcttcctctaccctcgcctggcaggctgaggaaccccctgaa
gatgaggctaatattattgagaaaatactctctgtgcgaacggtcaagaaagagacatcc
cctgatgaagcaccagaagagttggaggagttttacgtcaagtacagaaatttctcctat
ctgcactgtaaatgggcgaccttggaggaactggaaaaggacccacgcattcaacaaaaa
ctcaagcgcttcagaaacaagcaggcacaaatgaagcacattttcacagagccggatgaa
gacctttttaatccagattatattgaggttgatcgggttttagagatcgctatcaccact
gatacagaaacaggagaggaagttacccactacctggtgaaatggtgctcattgtcatat
gaggagagtacttgggagcttcaggaagatgttgaccctgtgaaaatccgagagtttgaa
gacctcaagaaaataccagaaattaaacttgtggaaaggcctctaccagaacagtggcaa
aaactggagaagtccaaagaatacaggaatgggaaccagctcagagaataccaattagag
ggaatgaactggcttcttttcaactggtacaacaggaaaaactgtattctggctgatgag
atggggctggggaagaccatccagtccataacgttcctctttgagattttctacatgggt
ctgagaggacccttcctcatcatcgccccgctctcgacgatcaccaactgggagagggaa
ttccgcacatggactgaaatgaacgtcattgtctatcacggcagccagatcagtcggcag
atgatcctgcagtatgagacgtactaccgagatgaacagggaaacatcatgactggtcag
tttaagtttcatggcgtgatcactacatttgaaatgattatggctgactgtccggagctg
aagaagattaactggcgctgtgtggtgattgatgaggcccatcgcctaaaaaaccgcaac
tgtaaactgctggagggactcaaactcatgaacctggaacataaagttcttctcacagga
actcctttgcagaactcagttgaggaactcttcagtcttcttaactttctcgaaccctca
cagttcccttccgagaccacgttcctggaggagttcggagacctaaagacagaggagcag
gtaaagaaactgcaagccattctgaagcccatgatgttgaggagactgaaggatgatgtg
gagaagaatctggcccctaaagaggagacgatcatcgaggtggagctcactaacattcag
aagaaatactaccgtgccattctggagaaaaactttaccttccttgccaagggagcgaac
cagcacaacatgcccaacctcatcaacacaatgatggagcttcgcaagtgctgcaatcac
ccatacctcattacaggtgctgaagaaaagattcttgagagcttcaggaaaacctacagt
tctgacgctctggattttcagctgcaggcaatgatccaggccgctggtaaactagtgctt
atcgacaagttactgcccaaactgctatctggaggacataaagtgctggtgttttcccag
atggttcgatgccttgatatactggaggactacctcattcagaggagatatacatacgaa
cggattgatgggagagttcgagggaatctaaggcaggctgccatcgatcgcttcagcaag
gtggactctgaccgcttcgtgttcctcctctgtacacgagcaggaggtctgggcatcaac
ctcaccgccgccgacacctgtatcatattcgactcagactggaacccgcagaacgacttg
caggctcaagctcgctgccaccggatcggtcaaagcaaagcggtgaaagtgtatcgactt
atcacgagaaactcatacgagagggagatgtttgacaaggccagtctgaaactgggattg
gacaaggctgttctgcaggacatcaaccgcaagggcagtctcaatggggttcagcaactg
tccaagatggaggtcgaagatcttctcaggaagggggcgtacggggcgctcatggatgag
gaagatgagggctctaaattttgcgaggaggatattgatcagatcctgcaacgccgcaca
cagaccatcacaatccagactgaggggaagggatcaacttttgccaaggctagctttgtg
tcttcagggaaccgtacagacatctctctggatgatccaaacttctggcaaaagtgggcc
aaaattgctgaactggaaattgactccaaggcagaaaaggagagtctggtgatcgacact
cctcgcgtaaggaagcagacgcgtcactataattcttttgaggacgatgaactgatggag
ttctctgaactggacagcgactcagaggaacgaccctgtcgcacaagacgtctcagtgat
cgcaacagacgctacctccgagcagagtgcttcagagtggagaaaaaccttcttattttt
gggtggggtcgctggaaggatattctcaatcatgggcgttttaaatggcacctgtcggag
cgagacatggaggtgctgtgcagggctcttctggtctactgtgttcgccattataaagga
gatgacaaaattaaaagcttcatctgggatctgattacacccactaaagatggacataat
caaacactgcaaaaccactcaggtctgtctgctcctgtcccgcgtggtcgcaaaggaaag
aaactgaagaaccagttgagtccacctgagctgaagaatgctgactggctggtccactgt
aacccagaggtcgtgcttcaggacgacagctacaagaaacacctcaaacaacattgcaac
aaggtgctactgagggtgcggatgctgtactatctgaaggttgaagtgctgggggaggct
gctaatcaggctcttgaagagatcccagccagtaaactggaggtaaccctgcctgatatc
gactacattgagatccctactatttggtgggattctgaggcggataaatcgctgcttatt
ggagttcacaaacatgggtatgagcggtataacgccatgcgtgcagaccctgctctgtgc
ttcctggagcgggtgggtatgcctgatgtcactgcactgacggtagaacaaagtggagca
gaaactgcttccgatgcaccggatagtatcagcaaaagtgatgaaattaaagaggaaaac
gacatgaagtctgaagaattagaagagaaagtagagatcaaggaggagcccatgtcagag
gaaacagggaaaaatgacactacagtgacagggggcttcgtagcatctctcgcaggagac
ctgattacagagatgatggaacaggggcggatacagtggccggcaggttcggctcttaca
gcacgtttacgccgcctcattactgcatatcagcgttacacgcgccgtgagccacttcgt
catgatttcctcttacacgatggaattgcacctgtgacgtggcaaattggagagtttagg
cactgcacaactgagcctgacccactctttttggagtggcaacgaaggtggacacgtcgt
gagcaggctgacttctatcgcacagtgtcctcgtttggagtagtgtatgacccagacaag
aaaatctttgactggggccagttccgtgcccttgctcgattggagaggaagaccgacgaa
agcttggagagatatttccacagctttgtttcaatgtgtcgcactgcatgtagactgccg
cctagaaaagatgaaggtaccgttgatccttcgctgtttgtggaacccattacagaagag
cgagctgcccgaacattataccgtattgagcttttgagaaaggtccgtgagcaagtattg
cggcacccactcctgggggcacgactgcaactttgtcgccctagtttgtacttacccgtc
tggtgggagtgtggcaaacatgatcgtgatcttctcatcggtgttgccaagcatggcttg
agtcgaactgacttctacatcctcaatgacccacaactatccttcctggaggcccatcgg
aactatgttcataaagaaaaccacagatatccagtcccaggcttgcctcaccatcattgc
tgcttgtatgatgccaaccttgtacattgtcagtccccacaacctccagagtatcatcac
acaccttcaccccacacgccaacacaacttgtccatactcatgggcatcaccagcccaca
gaagtggtagcgtcagagccaggaagttccctgggaataggttcaggaaacagggaaggg
tttttggactgccctccattagatgactcactggagttggggtctttacaacatgaaggt
ttgacatcagacacactacatagcaaatctggtaaagaggccttcaacggattcccgttc
aattctgcaactggtgggctgaatatgctaaattcgtatggtgtgcagggggagctaaat
ggggctcaaggagatatggcggactccatagctgggaaacttcgcagcgatgttctggtg
ggagagcaagggtcctcggaggagactggattaatggctccttctgtggaactcgatgaa
cttcaaactccatgggaaagctcagaccatgttgaaacctctgacatgttcaacgagact
gatcccattttgggagcacaagctttggaacccagctttttggatgctcctcaaccagac
gatggacgggagggtgatgaaacactaaccgactgtttgagcatgcccagttcggactct
caaagcaaccctgtcgagccactggcaccaagctttatgttgttcaaagaccttaatgtt
ggagaggcatctgtggatcagacagatttatcatccagtcttccagattatgttccacca
cctcttagtctcccggatgttagtcttgaccaggcagatcccattagtgaggatcaagag
gacaagcttagtgattccaacatcacacatggtgttcccagtccaggagaaggtgctgaa
agcatagggtttcattttgagaaagaagacctttctccagacagtctgaagactaaggat
tctcaagatgaaattgacaagatgccttcaatagagtctccaagggacaattgtcttgag
gaatctcagaaaggggactgcaaggtgacatttgatgactccaatgaaggagacttggaa
gaatcttacgagaagcctctaagagagacagaaaaagtgcctttagaggagtcttatgat
ttgacttgtgacgagaccctgcaggaaccttgtgaagggtttcagcaagactcagcggaa
cagcaattggtggaagaaccctctgaagaaccctgcaaagaaccatcagacccaatagaa
gagtgcaatctaactaacactactctctcaacagattaccctttgcctccttcactccca
tcatctccaactaccttacctgacacctctgtatctccggtccttgatgtagtccctaaa
caagagttcctcatggatccagtggtgtcagatgtgaagcctgagccagacagcactacg
cagacccctcaccttgagcagactgaggttttggatgtaaaggacaagataaaagacgaa
gatgcaaagacatcagcattattgggagatgttgatgcaccacgctttgcgctgcccatg
tgcgagatggcagacagtatccatgaaataagggaaccaaccattgctcagcttttacag
gagaaagcactcttctccttctcagagtggcctaaggacagagtgatcatcaaccgtatt
gacagtatctgccatactatcttaaaggggaagtggccttcctctagtcaacagtatgag
tctccctctgcattggctaacacctgcatgcccagcagtgcccaccagagggcaggattt
ctgactaccagaatgcctatatctcagagccttaacttcaacctcccacatgcagtaccc
cacttaccaaaggagcggttagttgccccagcatttctctctgagctcaaacgtcccagg
cgtgggtttgaattcgaggcagaagttcttgccaaaccaagccatcttggagaaaagatc
caggttggcgtgtctcatcgtgctaacgctcttctccttaatggttggcaggatgccgct
attgacctctccaaaccatctgaactaacagttggtggagacagtgggccaatcagtcat
atgagccacactgtccagtcagcgccccacaaaataaccgggataggctccatacaaggc
tcactgggattggatatggctggcattttgcaggctggcttaattcatcctgtcacaggg
cagattgtcaatggtagtcttcgtcgtgatgattcaatgttgagacggagaagaggacga
agaagaaatgtagagactcctgatctcggctttatgaagggacgagccatgaacttgcct
gaacaacagtgtgggtcagagagcatcagccagcctgttgtgtcctcaacatcctctcag
tcagaatgccctccatccaccccgactacacttcctactcaccctccagcaaactctcca
gctcctcctccagcctcagagaccctgaatgtgagcgtggacagggacacggccaataaa
ggcctaatggaatggctccgacaaaaccccaactacaacatggagctttctgcttttcca
tcgtctcagaatgcgagcatgttgcacagtttcttggagcgtccaaagcagagaaggcat
cgctgcaaagatcccaccaagctcgacgtcagctctctaactggagaggagagagtcccg
gtagtgcacagaaacacaggccgcaggcttggaggcgctatggctccagccattaaagag
ctctctcggtggctggatgcaaattcagaatactctgtggctcctgattgggcggatgtg
gtgaagcattcgggttttctaccggagggcaaattcgcacgcatcctcactggacctgtg
tgtcgggatcccggtccacgcagaagaggcaggcgaccccgcagcgagatgcccaaagcc
cccgagctccccgctggcatggctccgctcttcatgaacggtgggctcattggcagcatg
gacctggttagtttacccaatctccgcaatgtccctggtatcccactcaccggtatcatg
ggctttcctcatggtttcgccactgctgtaacatcaggagatgatgccaagaatggtctc
ggcatgttgcccatgatgctccatggcatggcggccgtgcagccgcccatgtatagcgct
cacatgagtgggatgatgagtcagtcactttcaacggcgacatccactatgtccaccgta
actgcatccacaacagcgagcgtgactacgaactccgcaaccgtaacctcaacctcaagc
ccgccggatagttcggatactgcacttcagcgggataacacgggctctccgatgagcacg
gagaactggattaaggaggaagcaaagcaaggaggggaagagaaaaaagtgtccgcttcg
gtgtctacagctgcggccactagcagcagtagtagtagctgcatcacaagcaccggcagc
catttgacctttaacccctttctaatcccgggaatgtcacatagtctgttgtatccgcat
atgttcttgccaccaggcagtataatggcattgcccgctatgcctgcagcagacagcacg
ggcagccctaagaggaagaggaagaaggtaagagaggaaggactcgtggagggaaacggg
aacggtggcgtgcagatggacggcgaggaatcgaagggggttaaagtcgaacagacaccc
gaacgaaagagccaagagggtgtaatggaagaagatggacatgatgtaaatttagctctg
gtcaaagattcttctgaccatatacaagatccttccgaggataaaagtactgaagaaaag
gaaaaaaacaaaacgggagaagaacctgagcaagattctcaaggcccgtgtgacggtgga
gactag
DBGET
integrated database retrieval system
