Rhinichthys klamathensis goyatoka (western speckled dace): 130104408
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Entry
130104408 CDS
T09701
Symbol
si:dkey-219c3.2
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130104408 (si:dkey-219c3.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130104408 (si:dkey-219c3.2)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130104408 (si:dkey-219c3.2)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130104408 (si:dkey-219c3.2)
Coactivators
SAGA/TFTC/STAGA complex
130104408 (si:dkey-219c3.2)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
130104408 (si:dkey-219c3.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
130104408
NCBI-ProteinID:
XP_056126911
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MMSLRFPQCLSSKTTHAPCAFLKRLSKMAGVPDPLEDMLYSEVDEKAVSDLVGSLESQLG
GQNKAVGPQGDIRRPANALNPHLGKLLPAQVGTTLEQQRQPQRNQEGNSQENGPDRIPAS
SSVPSTSNLPSTSANLVTATNRVQYHSSNPSTCSSDAAPTDSHSNTNHIASAVRTVPARI
QTVNGSSGTLNSSVIASAPASVNGIDIGAGVGTGKSNMSAPTSTNTAFVSAQPNSTLPHA
NVSLDSQANPTIALHRPPNTITSVVHNGGDPKVSGLPMQGTGLVSTSVAFTNTEPKSDPQ
NQIKAIVPNQLPGAPVGLHPSTPTQIIVSSSPVVTSLPVVSTPSVLAKPATTTLVGQHTT
LLRPGTPAQVTATATGQQRPGAPTTQLIVRPQQQTTIQLPPGFTIPPGMVLVRTEAGQLA
LVPQQVLAQAKAQNQNKATMSPRPATPTAGAAFRVTTPVAQQKTAVVTITSAQKPTTTVI
TAGARVQPAPQTVLKPSVTPQSPSTTSAAAPANRAPVLSQEMQENVKKCKNFLATLIKLA
SHNSPSPETSRNVKALVQDLLDAKIEPEEFTNRLQTELKSSPQPYLIPFLKKSLPALRLT
LLNSQQSLTQLSQASTTSTPLTMNTIKAPAPSTLPTTISTIRPAAAMTPTTTMGVKRPGL
QATPTRMPVVITQTVRTQGAVGTHLQVRNPMSVAFQASANQKQKLNDPGGGTFRDDDDIN
DVASMAGVNLNEENARILATGSELVGTQIRSCKDEAFLPASLLHKRLLETAKKFGVTEVS
METVTLISHATQSRLRSMLEKVSAVAQHRADSCKDEELYEQASDVRTQLKFFEQLEKIEK
QRKDDEERELLMKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPR
KKRKLDSPGASAGAELPAGSSGSATGSTSSSTSSVRQTRQRITRVNLRDLIFCMEQERTT
ARSMLLYKALLK
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcattacgtttcccacaatgcctcagcagcaaaacaacgcacgcgccgtgcgca
tttctcaagcgtctctcaaagatggcgggtgtccccgatccactggaagatatgctgtac
tccgaagtggacgaaaaagccgtcagtgacctcgtaggctcgttagaatcgcagttgggt
ggacaaaacaaggcggtgggtcctcaaggcgacatcaggagacccgcaaacgcgctaaat
ccacacttggggaaattactgcccgcccaagtaggaacaacactggagcagcagcggcag
ccacagcgaaaccaggagggaaactctcaagaaaacggtccggacaggataccggcgtcc
agctctgtcccctccacctcgaacctgcccagtacctctgcgaatttagttacagcaacg
aaccgggtgcaatatcattcatcaaatccatcaacttgttcaagtgacgcagcaccaaca
gactctcattccaatacaaatcacattgcgtctgctgtccggacggttcccgccagaata
cagactgtgaacggaagcagtggcacgttaaactcttctgttatcgcttccgcgcctgct
tctgtaaacggtattgacattggtgcaggtgtaggtactggtaaaagcaacatgtctgct
cctactagtacaaatactgcttttgtgtccgctcagcccaacagcacactgccacatgcg
aatgtgtcactagatagtcaagcaaaccccaccatagcactgcacaggcctcctaacacc
atcacaagtgtcgtacacaacggaggtgaccctaaagtctcaggattgcccatgcagggc
actggtcttgtctccacctctgtggcgttcacaaacacagagcccaaatctgaccctcaa
aaccagattaaagccatcgtcccgaaccagctccccggggctcctgtagggttgcacccc
agcacgcccactcaaattattgtgtcctcaagtccagtggtgacctcacttcctgtggta
agcaccccttctgtccttgcaaagccggctacaaccactctcgtaggacagcacacgacc
ctgttgagacctggtacgcccgctcaagtgacagcgaccgcgacgggccagcagcgacca
ggggcacctacgacccagctgattgtcagaccccagcaacaaactactattcagttacca
ccaggattcaccataccaccaggtatggtgctggtacgtacggaggccggtcagctggcg
ttggttcctcagcaggtcctggcccaggccaaagctcagaaccaaaataaagccaccatg
tcaccgagacctgctacacccactgctggagcggctttcagagtcaccacacctgttgcc
cagcagaagacagcagtggtaacgattacctcagctcagaagcccaccaccacagtcatt
acagcaggagcccgtgttcagcctgcaccacagacagttctcaaaccctctgtgacacct
cagagtcccagcacgacctctgccgctgccccagctaacagagcacctgtcctctctcag
gaaatgcaagagaatgtaaagaagtgcaagaacttcctagcaactctcatcaaactggca
tcccataattcaccctccccggaaacatctaggaatgtgaaggcactagtgcaggatctg
ctggatgcaaaaattgagcctgaggagtttacaaatcgcctgcagacagagttgaaatca
tctcctcaaccatacctgatcccttttctgaagaaaagcctgcctgctctgcgtctgaca
cttctgaactcccagcagtctttaactcagctgtctcaggcctcgactacgtccacccca
ctgacgatgaacaccattaaagctccagcgccgagcacactacccaccaccatatctacc
atccggccggctgctgccatgactcccactaccactatgggtgttaagaggcccgggctt
caggctactccgacacggatgccggtggtgattacacagacggttcgtactcaaggtgct
gttgggacacacttgcaagtgaggaaccccatgagtgtggcttttcaagcctcggccaat
cagaaacagaagctaaatgaccctgggggtgggactttcagggatgatgacgacatcaat
gacgtggcatccatggctggtgtgaacctgaacgaggagaacgcccgtatcttggccacg
ggttcggagctggtgggcacccagatccgttcctgtaaggacgaggccttccttcctgcc
agcctgctccacaaacgtctcctggagactgccaagaagttcggcgtgacggaggtgtca
atggagacggtcactctcatttctcacgccactcagtccaggctgcgctccatgctggag
aaagtctcggccgttgcgcaacaccgtgccgactcctgcaaagatgaggagctgtacgag
caggcgtcggatgtgcggacccagctgaagttctttgagcagctggagaagatcgagaag
cagaggaaagatgacgaggaacgggagctactaatgaaagccgcaaaaagtcgctcgagg
caggaggatcccgaacaggcccggcttaaacagaaagctaaagagatgcagcaacaggaa
ctcgcccagatgagacagcgggatgccaaccttacagcccttgctgccattggaccccgc
aagaaacgcaagcttgactctcctggggcctcagcaggtgcagagcttcctgcgggctcc
tctggatcagcgaccggttctacctcatcctccacgtcttcagtccggcagacccggcag
cgcatcacccgggtaaacctcagggacttgatcttctgcatggagcaggagcgaaccaca
gccaggtccatgctgctctacaaggcccttctgaagtag
DBGET
integrated database retrieval system
