Rhinichthys klamathensis goyatoka (western speckled dace): 130104507
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Entry
130104507 CDS
T09701
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03030
DNA replication
rkg03420
Nucleotide excision repair
rkg03430
Mismatch repair
rkg03440
Homologous recombination
rkg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130104507 (rpa1)
03420 Nucleotide excision repair
130104507 (rpa1)
03430 Mismatch repair
130104507 (rpa1)
03440 Homologous recombination
130104507 (rpa1)
03460 Fanconi anemia pathway
130104507 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130104507 (rpa1)
03032 DNA replication proteins [BR:
rkg03032
]
130104507 (rpa1)
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130104507 (rpa1)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130104507 (rpa1)
DNA replication proteins [BR:
rkg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130104507 (rpa1)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130104507 (rpa1)
MMR (mismatch excision repair)
130104507 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
130104507 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
130104507
NCBI-ProteinID:
XP_056127050
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MTVRLSEGAIESLTKGVEVSNPVLQCVNIRKIDGGNGLSRFRLMMSDGLHTMSSFMLSTQ
LNPMAEQNQLASNCVCMLKRSVTNVLKDGRRVVVILDMEVLKSADQMPGKIGDPTPYVEG
QSRAQQSTAPAPSPSVRPLQSQNGSDGSMNRPPAQSFGKKPMAAPNTPGGSSKVVPIASL
NPYQSKWTVRARVTNKSAIRTWSNSRGDGKLFSMELVDESGEIRATGFNNEVDKFYSLIE
QGKVYYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSHDVPMLQCEFISIADLES
REKDTIVDVIGVCKNTEDVMRITTKNSREVSKRNIQLMDMSGRVIQLTMWGNDAETFDGS
GQPIMAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELR
GPGGGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCMYQACPSKDCNKKVVD
QQNGMYRCEKCDKEFPDFKYRLMLSANVADFGDNQWVTCFQDSAETLLGQNSSYLGQLKD
SNEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRK
MAAQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgactgttagactgtcagaaggggcaattgagtccctgactaaaggagttgaagtcagc
aaccctgttcttcaatgtgtgaacatccgcaagattgatgggggaaatggcctatcccgt
ttccgtctcatgatgagtgatgggctgcacactatgtcctcattcatgctctccacacag
ctcaatcccatggctgagcaaaaccagttggcctctaactgtgtgtgtatgctgaaaagg
agcgtcactaatgttctcaaggatggacgacgtgtggtggttatactggacatggaagta
ctcaagtctgccgaccagatgccaggaaaaattggagacccaactccttatgtagagggt
cagtcgagggcacaacagagtacagctccagctccatctccatctgtacgtccattacag
tctcagaatggaagtgatggttcaatgaacagacctcccgctcagagcttcgggaaaaag
cccatggctgcccccaacacccctggaggcagctctaaagttgtgcctattgccagcctc
aatccataccagtcaaagtggactgttagagctcgggtcaccaacaagagtgccatccgc
acatggagtaactccaggggagacgggaagcttttctccatggagctagtggatgaaagc
ggggagatcagagcaactgggtttaataacgaggtggataaattctactcactcatcgag
cagggaaaagtctactacatctccaaaggcaccctgaagattgctaacaaacagttctct
tcacttaagaatgactatgagatgactctcaatggagagacaagcatcatcccttgtgag
gacagccatgatgtccccatgctgcagtgcgagtttatttctattgctgacctggagtcc
cgggagaaagacaccatcgtagatgtgatcggagtatgtaaaaacacagaagatgtgatg
cgcatcacaaccaagaacagtcgtgaggtttccaagagaaacatccaattgatggacatg
tccggcagagtcatccagctcaccatgtggggcaatgatgcagagacatttgatggcagt
gggcagccaatcatggccattaagggggcaagattatctgactttggtgggcgttctctc
tcaactctctacagcagcacagtcatgatcaaccccgatattcctgaggcatacaaactg
cggggctggtatgataaggaaggacatgctttggatggacagtcgatgactgaattgaga
ggacctggtggtggtggaaacacgaactggaagaccctggcggaagtcaagaatgagcac
ttgggccatggagacaaagctgattatttctcttgcatcgccaccatagtctacatccga
aaagagaactgcatgtatcaggcctgtcccagtaaagactgcaacaagaaggtggtggac
cagcagaatggcatgtaccgctgtgagaaatgtgacaaagagttcccagacttcaaatat
cgcctcatgctctcggccaacgtcgctgattttggagacaaccaatgggtgacttgcttt
caggacagtgctgagacccttctgggccaaaactcaagttatcttggccaactcaaggac
tcgaacgaagctgcatttgacgaggtctttcagcatgcaaacttcaatacttttgtcttc
cggaaccgagtgaagctggagacctacaatgatgaatctcgcattaaagtgacagtggtg
gatgccaagcctgtggaccaccgagaatacagcaaacggctgatcatcaacataaggaag
atggctgcacagtag
DBGET
integrated database retrieval system
