Rhinichthys klamathensis goyatoka (western speckled dace): 130104595
Help
Entry
130104595 CDS
T09701
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130104595 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130104595 (prpf8)
Spliceosome [BR:
rkg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130104595 (prpf8)
Complex C
U5 SnRNP specific factors
130104595 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
130104595
NCBI-ProteinID:
XP_056127197
LinkDB
All DBs
Position
Unknown
AA seq
2342 aa
AA seq
DB search
MAAAFPYRGVPGTMPPGVPPPPPAVAPIPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGF
VDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQI
RDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEE
PPLDYADNILDVEPLEAIQMELDNEEDSSVVDWLYEHQPLKDTTKYVNGTTYRRWQFTLP
MMSTLYRLANQLLTDLVDGNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDW
NEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFD
PLINPISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNL
RSGRTRRAIDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLF
RSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTK
ERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYR
YKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLG
NLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHL
SESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCK
KNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYK
HDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKE
VGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVY
KWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKN
NVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLS
FQDTATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKC
WPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFE
CRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGS
TTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPP
VVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQ
PWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYD
KGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGT
YFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQV
QLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKET
IHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDS
HDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKI
MKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKT
FEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLP
VEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQ
MVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTD
EEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQT
KEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVS
SDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGT
HQTVHLPNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTII
ITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMV
PGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGELYNADREDM
YA
NT seq
7029 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgctttcccctacagaggtgttcctggaacaatgcctccaggtgttcctcca
cctcctcctgctgttgctccaataccagattacatgactgaggagaaactgcaagagaaa
gctcggaaatggcagcagcttcaggccaaacgctactcggagaaaagaaaatttggcttt
gtggatgctcagaaagaggacatgccacctgagcatgtgcgaaaaatcatcagggatcat
ggtgatatgacgaacaggaaatttcgtcacgacaagagggtctaccttggggcactgaaa
tatatgccccatgcagtactcaaactgctggagaacatgcccatgccctgggagcagatc
agagatgttcctgtgctctaccacattacaggcgccatttcctttgtaaacgaaatccca
tgggttattgagccggtgtacattgctcagtgggggacaatgtggatcatgatgcgtcgt
gagaagagagacagacggcacttcaagcgcatgcgtttccccccatttgatgatgaagag
cctccattagattatgcagacaacatcctggatgttgagcctctggaggcaatccagatg
gagctggacaatgaggaggattcttctgttgtagactggttgtatgagcatcaacctctg
aaagataccacaaaatatgtgaatgggaccacatacagacgctggcagttcactttacca
atgatgtccactctgtatcgattggctaatcagctgctgacagacttggtggatggaaac
tacttctacttgtttgacttgaaggctttcttcacctccaaagctttgaacatggccatt
ccaggggggcccaagtttgagccgcttgtcagagacattaacctccaggatgaagactgg
aatgagttcaatgacatcaacaagatcatcatcaggcagccaatcaggaccgaatacaaa
attgcattcccttacttgtacaataacctgccacatcatgtgcacctcacctggtaccac
acaccaaacgtggtgttcatcaagactgaggatcctgatctgcctgccttctactttgac
cctctgatcaaccccatctctcataggcactctgttaagagccaagagccactgccagat
gatgatgaggagtttgaacttcctgagtatgtagagccattcctgaaggagacgcccctc
tacactgacaacacagctaatggaattgcactgttgtgggcacctcgtccattcaatctc
cgctcgggaagaaccagacgggctattgatgtgcctctcattaaaaactggtatcgtgag
cactgtcctgcaggtcaacctgtgaaggtgcgtgtgtcttaccagaagctcctgaagtac
tacgtgctaaacgctctaaaacacagaccacctaaggcacagaaaaagagatacctgttc
cgttctttcaaggccaccaaattcttccagtccacaaagctggactgggtagaagtcggt
ctccaggtgtgccggcagggctacaacatgctgaacctgctgattcacagaaagaacctc
aattacttgcacttggactacaacttcaacttgaagcctgtgaaaaccctcacaacaaag
gaacgtaagaagtccagatttggaaacgcgttccacttgtgccgtgaggttctgcgtttg
agcaagcttgtggtggacagtcatgtgcagtacaggcttggaaacgttgatgcattccag
ttgtcagatggactgcagtacatctttgcccatgtcggtcagttgactggcatgtaccgc
tacaagtacaagctcatgaggcagattagaatgtgcaaagacctgaagcatctcatctac
taccgcttcaacacaggcccagttggaaaaggtcctggctgtgggttctgggctccaggc
tggagagtctggttgttctttatgagaggcatcacccctcttctggaacggtggcttggc
aatcttctggccaggcagtttgagggtcgacactctaagggtgttgccaagactgtgacc
aaacagcgtgtggaatctcactttgatcttgagctgagagctgctgtgatgcatgacatc
ctagatatgatgcctgaaggtatcaagcagaacaaggctagaaccatcttgcagcatctc
agcgagtcatggaggtgctggaaggccaacatcccttggaaggttcctgggcttccaacc
cccatcgagaacatgattctccgctacgtgaaggccaaagctgactggtggaccaacacg
gcccactacaaccgtgagagaatcagaagaggagctactgtggataagactgtgtgcaag
aagaacctgggacgtctcactcgactctacctaaaggcagagcaagagagacagcacaat
tacctgaaggatgggccttacatcactgctgaagaggccgtggccatctacaccaccaca
gtgcactggctggagagtcgtcggttctctccgatccccttccctcctctctcctacaaa
catgacactaagctgctcatcctggctttggagagactcaaggaggcttacagtgtgaag
tcgaggctgaaccagtcacagcgtgaggagttgggtctgattgagcaggcctatgacaac
cctcatgaggctctgtccagaatcaaacgtcacctcctcactcagagagccttcaaagag
gtgggcattgagttcatggacctttacagtcatctggtgccggtttacgatgttgaacct
ctggaaaagatcactgacgcgtacctggatcagtacctgtggtatgaggcagacaagcgc
aggcttttcccaccctggatcaagccagcggacacagagccacctccactgctagtgtac
aaatggtgccaaggaatcaacaacctgcaggatgtgtgggagacagcagagggtgaatgt
aacgtcatgctggagtctcgctacgagaagatgtacgagaagattgacttgacattgttg
aacaggcttctgcgtctcattgtggatcacaacattgccgattacatgacggccaaaaac
aatgttgtcattaactataaggacatgaaccacacaaactcgtatggtattatccgtggc
ctgcagtttgcctctttcatcgtgcagtactatgggttggtgatggacctgctggtgctg
ggtctgcacagagcaagtgagatggctgggcctcctcagatgcccaatgacttcctcagc
ttccaggacacggccactgagagtgcccatcccatccgtctttactgcagatacatagac
cgcattcacatcttcttcaggttctctgctgatgaggcgagagatctgatccagagatac
ctgaccgagcacccagatcccaacaatgagaacattgtgggctacaacaataagaaatgc
tggccccgtgatgctaggatgagactgatgaaacatgatgtgaacttggggcgtgctgtg
ttctgggacatcaagaatcgcctccctcgttctgtgaccacagttcagtgggagaacagc
tttgtgtctgtgtacagcaaggacaaccccaacctgcttttcaatatgtgtggctttgag
tgtcgcatcctcccgaagtgccgcactagttatgaggagtttacgcacaaagatggtgtt
tggaatttgcagaacgaggttacaaaggaaaggacagcacagtgtttcctgcgtgtagat
gacgagtccatgcagaggttccacaacagagtgcgacaaattcttatggcttctggctcc
accaccttcactaagattgtgaataagtggaacacagctctgattggtctgatgacgtac
ttccgtgaagctgtggtcaacactcaagagcttctggacctgctggtgaagtgtgagaat
aagatccaaacccgtatcaagattggtttgaactccaaaatgcccagccgtttccctcct
gtggtgttttacacccctaaggagttgggtggactgggaatgctttccatgggacacgta
ctaatcccacagtctgaccttcggtggtccaaacagactgatgtgggaatcactcatttc
cgctctggaatgagtcacgaggaggatcagttgattcctaatctgtaccgttacatccag
ccatgggagagtgagttcattgactctcagagagtttgggccgaatacgccctcaagcgt
caggaggccattgctcagaacagacgtttgacactggaagatctggaggactcctgggac
aggggtattccacgtatcaacaccctcttccagaaggacagacacacactggcttatgac
aagggctggagagtcagaacagacttcaaacagtaccaggttctgaagcaaaatccattc
tggtggactcaccaaagacatgatggaaaattgtggaatttgaacaactaccgtacagac
atgatccaggcacttggaggggtggaaggcattcttgagcatactctgttcaagggaacc
tacttccccacctgggagggtctcttctgggagaaggctagtggtttcgaagagtccatg
aaatggaagaaactcaccaatgctcagagatctggtctgaaccagattcctaaccgacga
ttcaccttgtggtggtctcctacaatcaacagagccaatgtatatgtgggtttccaggtg
cagttggacctcactggaatcttcatgcatggtaaaatcccgacgctcaagatctctctg
atccagatcttcagagctcacttgtggcagaagattcatgagagcgtcgtcatggatctc
tgtcaggtgtttgaccaagagctggatgctttggagatcgagactgtccagaaagagaca
atccatcccaggaagtcttacaagatgaattcctcctgtgctgacattctgttgtttgca
tcctacaagtggaatgtctcgcgtccctcgcttctagcagactccaaggatgttatggac
agcaccaccacacagaagtactggattgacattcagctcagatggggtgactacgactcc
catgacattgagcgatatgccagggccaagttcttggactacaccactgacaacatgagt
atttacccatcacccactggagtcctgattgccattgatctggcttacaaccttcacagt
gcttatggaaactggttccctggagccaagcccctgatccagcaggccatggcaaagata
atgaaggccaaccctgctttgtatgtgctgagagagcgaatccgcaagggtctccaactc
tactcttcagagcccactgagccttacctatcttcccagaactatggagagctcttctct
aaccagatcatctggtttgtggatgacaccaatgtgtacagagtcaccatccacaagact
tttgaaggtaacttgacaaccaaaccaatcaatggggcaattttcatcttcaaccccaga
actggacagcttttcctgaagatcattcacacctctgtatgggcaggacaaaagcgtctc
ggacagctggctaagtggaaaactgctgaagaagtggctgccctgatccgatcgctgcct
gttgaagagcagcccaaacagattattgtgaccaggaagggcatgttggatcctcttgag
gtgcacttgctggacttccccaacattgtaatcaagggctctgaactccagctgccattc
caggcatgtctgaaagtggagaagtttggagacctcattctgaaggccacagagcctcag
atggtcctgttcaatctgtacgatgactggctgaagaccatctcctcttacactgctttc
tctcgtttgatcttaatcctgagagcacttcatgtcaataatgaccgtgctaaagttatc
ctgaagcctgacaagaccaccatcaccgagccccaccacatctggcccactctgactgat
gaggagtggatcaaagtggaggtgcagctcaaagatctcatcctggctgactatggcaag
aagaacaatgtgaatgtggcatctttgacccagtctgaaatcagggacatcatcctgggt
atggagatctcggctccatcccagcagagacaacagattgctgagatcgagaagcagacc
aaggagcagtctcaactaacggccacacagactcgcactgtaaacaaacacggggatgag
attatcacctccaccaccagcaactacgagacgcagaccttctcttccaaaactgaatgg
agagttagggcgatctctgctgcaaacttgcacttacgtactaaccacatctacgtatca
tcggatgacatcaaagagactgggtacacttacatcctgcccaagaacgttctgaagaag
ttcatctgtatctcagatctgcgtgctcagattgcaggttatctctatggaaccagccct
ccagataaccctcaggtaaaagagatccgctgcattgtgatggtgccacagtggggtacg
catcagacggttcacctgcccaaccagctgccacaacatgagtacttgaaggaaatggaa
cctcttggatggatccatacacagcccaatgaatcgccccagctttctcctcaggatgtc
accactcatgcaaaggtcatggctgacaacccatcctgggatggcgagaagactatcatt
attacttgcagtttcacccctggttcctgcacgctgacggcatacaagctgactcctagt
gggtatgagtggggtaggcaaaacacagataagggtaataaccccaaaggttacttgcct
tctcactacgaaagagtacagatgctcttgtctgaccgtttccttggcttcttcatggtg
cctggccaggtttcctggaactacaacttcatgggtgttcgccatgaccctaacatgaag
tatgacctacagttggccaacccaaaagagttctaccatgaagttcacagaccatctcac
ttcctcaacttcgcttctttgcaggaaggtgaactctacaatgctgaccgtgaggacatg
tatgcataa
DBGET
integrated database retrieval system
