Rhinichthys klamathensis goyatoka (western speckled dace): 130105476
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Entry
130105476 CDS
T09701
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130105476
04121 Ubiquitin system [BR:
rkg04121
]
130105476
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
130105476
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
130105476
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
zf-C2H2_12
DUF659
DUF6689
UBact
hAT-like_RNase-H
BSP_II
Motif
Other DBs
NCBI-GeneID:
130105476
NCBI-ProteinID:
XP_056127459
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MEEPLTIHPAPSGLKASVWIHFGFHGRSSKHVDRTHAVCRHCHTKLKNCGNTSNLRAHIS
RFHPEEAGWVKDDRLKPVIPPNQRTLHDMTTKLAPGSERAKKITTSISYFIAKDMRPYSV
VENQGFRYMVHSMEPRRELWMIATRALICVEFLKAAADEWGIETHDLVLVTDNASNMNVA
AELGNFLHVRCYAHTLNLACQRALKLPAVARLLGRVRRITAFFHRSTTASHVLEQKQALL
ELPKHKLKTDAPTRWNSGFDMVDRFLEQQPAICAALLSPQMRKGAHDICTLSEGDVSGAE
HLVKTLKPMKLATTTMSEESMPTLSIIAPLHTQLLADFTPAPEDDPMTREIKHAIREDLR
KRYTSTKEKHTLHTASCLDPRFKALPFLSEDEKVETYSRVTTEAASSLELMRQEAEVPEG
EGDDMAEGHDDGEEDDAVQKVCDEALKLDEDDGPSTPSTSRPSSLTALLGQTFNVAVTTA
EPKSAHTRAEEEVRMYLGAPSLPLTDDPLEWWRTNHHVYPLLAKLAKRYLCIPGTSVAAE
RVFSTAGDIVSAQRSTLTPQHVDQLVFLHKNLVIPEL
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaccactaacgatccacccagctccatctgggctcaaagcaagcgtgtggatt
cattttggttttcatggcaggagctctaaacatgtagatagaacgcatgccgtctgtcga
cattgccacactaaactgaagaactgcggcaatacgagcaacttgagggcccacatttcc
cgctttcatccagaggaggcagggtgggttaaagacgaccgcctgaagcccgtcatccca
ccgaatcagcgcactctccacgatatgacaacaaagttggccccgggctcggagagagct
aagaaaatcacaacgtcgatatcttattttatagctaaagatatgaggccatacagtgtg
gttgaaaaccaaggcttccgctacatggtccacagtatggagccaagacgagagctatgg
atgatagccacacgggcgctaatatgtgtcgagtttctcaaagctgcggcggacgagtgg
gggatagagacacacgacctggttctcgtcacagacaacgcttcaaatatgaacgtggct
gcagagctgggcaactttctacatgtccgttgttacgctcacaccctaaacctcgcctgc
caacgagcactgaagttgcccgctgtagcccgactgttgggtcgagtcagacggatcacc
gccttcttccaccgcagcaccacagccagtcatgtgctggaacaaaagcaggccctactc
gaactgcctaaacacaaactgaagacagatgctccaacaaggtggaatagtggctttgac
atggttgatcggttccttgaacagcagcctgccatctgcgctgcgctcctctcccctcaa
atgaggaaaggtgcgcatgacatctgcacactgagtgagggagacgtgtccggcgctgaa
caccttgtgaagaccctcaagcccatgaaattggccaccaccacaatgtctgaggaaagc
atgcctactctctcaatcatcgccccactacacacacagctcctggccgacttcacccct
gcaccagaggatgatccaatgacccgggaaatcaagcatgctatccgggaagatttgagg
aagagatacacatctacaaaagagaagcacacactccatacagcatcttgcctggatcct
cgctttaaagctctcccattcctttcagaggatgaaaaagtggagacatacagcagagtg
actacagaggctgcatcatccctcgagttgatgaggcaagaggctgaagtccctgagggg
gaaggtgatgacatggctgaggggcatgatgacggtgaggaggatgatgcagttcagaag
gtttgcgacgaagccctgaagctggatgaagacgatggcccttccacgccctctacctca
agaccatcttctctgactgcactgctgggccaaacatttaatgtcgctgtcaccacagca
gagcccaagtcggcacacaccagggctgaggaagaggttcgcatgtatctgggggcccct
tcacttcctctcaccgatgacccccttgagtggtggcgcaccaaccatcatgtgtatcct
ctcctagctaaactggccaaacgatatttatgtatcccaggtacgagtgttgctgcagag
agagtgttctccactgcgggagacatcgtgtcagcacaacggagcacactcacgccacaa
catgtggaccagctggtcttcctccataagaatctggtcattccagagctatga
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