KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130105489
Entry
130105489         CDS       T09701                                 
Symbol
rfc3
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03030  DNA replication
rkg03410  Base excision repair
rkg03420  Nucleotide excision repair
rkg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    130105489 (rfc3)
   03410 Base excision repair
    130105489 (rfc3)
   03420 Nucleotide excision repair
    130105489 (rfc3)
   03430 Mismatch repair
    130105489 (rfc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rkg03032]
    130105489 (rfc3)
   03036 Chromosome and associated proteins [BR:rkg03036]
    130105489 (rfc3)
   03400 DNA repair and recombination proteins [BR:rkg03400]
    130105489 (rfc3)
DNA replication proteins [BR:rkg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    130105489 (rfc3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    130105489 (rfc3)
Chromosome and associated proteins [BR:rkg03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    130105489 (rfc3)
DNA repair and recombination proteins [BR:rkg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     130105489 (rfc3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    130105489 (rfc3)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA AAA_22 AAA_11 AAA_16 RuvB_N DUF2247 Mg_chelatase AAA_30 AAA_5 ABC_tran nSTAND3
Other DBs
NCBI-GeneID: 130105489
NCBI-ProteinID: XP_056127473
LinkDB
Position
Unknown
AA seq 356 aa
MSLWVDKYRPTSLAKLDYHKEQANHLKNLVQCGDFPHLLVYGPPGAGKKTRIMCLLRELY
GPGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQ
IQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVISPIRSRCL
AVRVPLPSVEEVCSVLSGVCRKEGLLLPPELARQIAEKSGRNLRKALLMCEACRVQQYPF
SPDQDIPVTDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPDVIMKGLVTELL
SNCDGHLKAEVVQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYKKFMEDGLDNFMF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagtttatgggtggataaatatagaccaacgtccttggctaaactcgactaccacaag
gagcaagcaaaccatctaaaaaacctggtccagtgtggtgattttccacacttgttggtt
tatggaccgcctggtgctgggaagaaaacacggatcatgtgtctgctcagagagttgtac
ggacccggggtcgagaaactcaggattgaacaccagtccatcacgactccatctaaaaag
aagcttgaaatcaacactattgccagcaactatcatctagaggtgaatccaagtgatgct
gggaacagtgaccgtgtggtcattcaggagctgataaaaactgtcgcccagtctcagcag
attcagtccagtgcccagagagagttcaaagtggtgctgctgactgaggtggaccgtctc
actaaagatgcccagcatgctttgcggcgtacgatggagaagtacatgtccacttgtcga
ctgattctttgctgtaactccacctcaaaagtgatctcccccatcaggagcaggtgtctg
gctgtgagagtccctctgccaagtgtggaagaggtgtgcagtgtcctgtcaggcgtttgc
aggaaggagggcctgctgcttcctcctgaactggccagacagattgctgagaaatctggc
cgtaacctccgtaaagcactgcttatgtgtgaagcctgcagagttcaacagtatccattc
tctccagaccaggacatccctgtgacagactgggaggtgtacctcagagagactgctaat
gctatagtcagccagcagagccctcaaagacttttagaggttcgggcacgattgtatgaa
cttctaactcactgcatcccaccagatgtcatcatgaagggcctggtgacggagttgctg
agtaactgtgatggacacctgaaggccgaggtggttcagatggcggcgtactatgagcac
agactgcagctcggcaacaaagctatttaccacctggaggcctttgtagctaaattcatg
gccatctacaagaagtttatggaagatggacttgacaactttatgttctga

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