Rhinichthys klamathensis goyatoka (western speckled dace): 130105642
Help
Entry
130105642 CDS
T09701
Symbol
frem3
Name
(RefSeq) FRAS1-related extracellular matrix protein 3
KO
K23383
FRAS1-related extracellular matrix protein 3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99992 Structural proteins
130105642 (frem3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
DUF807
Motif
Other DBs
NCBI-GeneID:
130105642
NCBI-ProteinID:
XP_056127699
LinkDB
All DBs
Position
Unknown
AA seq
3129 aa
AA seq
DB search
MAGCLQRGRLSAAGAPLKCLVILISLGCCLSKVDADPFDTAFRHSHRPGPTVETILVANN
GIRVPFGRSIYLDSINDLVTEVHAGDRCHITVLDNDPLAQRPGMLTPKKFPCAFGAEEVK
YTHFGSRSPSKDHIKLQLRYDSNTDTVVVPLILEVEVVFQQLEIVTRNMPLVVDKLNGLS
NPIDKKTLEFAFEDGVTTCKVTTLVGAGKLPRYGGLTDNSVNGQMINCDDFVKKGIQYQH
TATTNSPNRDYIPMLVEVQDNDGNTIQQEHFQIMVRIKEGNENTPPKPSFISMMMMEIDQ
FVMTAITLDMLAAEDIESDSDELIFNITSPLGYQQGYIISTDDQNQPITSFHQRDIKDLK
IAYKPPSEDSDLERIFQIEFEIVDTDGAVSDPFAFMIVVKPMNTLAPVVTKNTGQLLFEG
QSRPLSSSHNLEISDEDNLDDVKITVIDGLKHGELTVLGSQRNFFTTADLDAGIVVYQHD
GSDTYSDNIIFRMTDGNDEVEFLFPITIAPTDDEPPIINANTGIVLFKNEVMQISPFILS
ATDIDSEDSTIKFILEEPFSAIGELLIKQVEPPPDPSAWKFSATDEMFEQVVTEWFQQDI
LDGKLFYRHTGPHSTTTVIDQFAFRVQDDNDPPNQSGEHVFIIKINPVDDIPPELYSGTT
LHMTVKEYELTFFKKKFLRYTDLDCDDRDLKYTIIKPPTDTDENSPVPLGAIVLTDSPDI
IISEFTQAQVNHHKVAYKPPDQELGITPKVVQFSFSVEDTASNSVDGLFTIFLQPVDNKP
PVITNTGFTVLERNTYIITKNELDASDQDTDDENIKFIVTQIPRFGQLQYLGIDMSNGET
FVLEDIENSRLAYIHSGEESLHDAIKLDISDGFHEVPIVVKISIKPVDDETPKIMLPAGL
LGTSIDVLENGATEITSNVIQGRDEDTDDLMLTFIVEEPPKLGEIMVNGAPAERFTQQDI
INGVVVYVHTSGEIGPIKEHDSFNLTISDMSDEWVVGGNKVQGVRVQVTILPVDSIPPIV
NVGGQFVVVEGEKNVITLEHIQAEDIDTDNDDILCTIIVQSTSGYVENISPAPGSEKSRV
GTAITAFTIKDVSLGHIYYVQSIHKSVEPVEDRFTFRCSDGINFSERHFFPIVIIPANDE
KPEIFIREFVVMEGMSLVIDTPILNAADADIPSDELVFEILKNPKHGNIVQQLSTGTVPV
VTFTLEQIKEASNIVYEHDDSETKEDSFDIRLTDGKHTVEEKVIIMVIPVDDETPRMAIN
DGLEVEIGETKVISNRVLKATDLDSEDKELTYIIRYGPGQGYLHRITKHGVVIGNISIGM
NFTQDELDKQLIQYVHTGQEGVRDLLKFDITDGINPLIDRYFYINIGSMDMVFPDVINKG
VTLKEGGKVTLTTDLLSTTDINSPDEYLSFSITRAPSRGHLESTDLPGVPISTFTQLQLA
GNKVYYIHTSDDEVKMDSFEFEVTDGYNPVFRTFRVSITDVDNKKPVLTINKLVLGEGET
KLITPFELTVEDRDTPDNLLRFVVTQVPVHGQLLFNGTQVITSFTKQDLNENRITYRHDG
TETNEDSFSFTITDGTHTEFYVFPDTVYETRKPQMMTIHISTVDNGVPQIIVNKAAPTLR
VLHTGHLGFLITSKALKAEDRDSPNKVLQYVVTETPLHGFIMNSALGNDSINSFSQADID
DMKICYVLLDGSNATSDIFYFRVEDNGGNKLKPQPFRLNWAWISLEREYYIVDEDAKFLE
VTLKRRGYLGETSFVSIATKDGTAKQDKDFRGKSQKQVQFNPGQTSATWRVKIFTDQEFE
TSEMFKIQLSEPVMAVLEYPDTATVEIVDPGDESTVFFPQAEYRIEEDIGELLVPVRRSG
DVSQELMVICYTQQGSATGTTPSTVLSYSDYITRPEDHTSVLRFDKDEREKSCRIIIIDD
SLYEEDESFNVSLSMLMGGQVGAKFPNAKVVILPDSDDEPSFYFGETEYTVDESDGYVEV
KVWRTGTDLSKTATVTVRSRKSDPVSAEAGLDYVGISRNLDFAPGVTMQTFRVTILDDLG
QPELEGPETFELVLRMPMNAVLGEPSKTVITINDTVTDLPKVQFREEEYKVDEADGEVKA
MVYRSGDISQRSTVLCYTRQGSAQVMMDYDERPNTDASIIVFLPGEIEKPCVVTLVDDTV
HEEDEEFRLVLGTAKSKSPYGASVGEQKEALVTITDHKDKSIIRFAEIKYSVREPQLPGE
IAVVKIPVLRQGDTSKVSVVRIHTKDGSATSGEDYNPLSQDVEFKEGETEHVVEIQVLYD
GQREIREAFTVHMKPDEYMVAETQMSKAIVYIEEMNSVADVTFPAVPQVVSLLLYDDTIR
AKDNPHPPTGYPVVCVTACNPKYFDFDKTGSICSVENINDTLTQYRWMVSAPSGPDGVTS
PMREVDTNTFFTNTKSITLDSIYFQAGSRVQCAARAFNANGDAGLELSSPIVVISREEGL
CQPRIPGTVGAEPFSAKIRYTGPDDPDYPNLIKLTVTMPHMDGMLPVISTRPLSNFELTL
SPDGTRVGNHRCSNLLDFNEIQTAHGFITDATKNPEIIGETSPYQYSVAMRSTNSLRFYR
NLNLEACLWEFSSYYDMSELLNDCGGSIGTDGQVLNLVQSYVTLRVPLFVSYVFHSPVAV
GGWQHFDLRSELRLTFVYDTAILWQDGIGSPPEAELQGAMYPTSMRINDEGRLVVNFKTE
ARFRGQFVMSHPGTTLSSMVMSADHPGLTFTLSLVRTEPTYNQPMQQWSFVSDFAVRDYS
GTYTVKMIPCSASPNGEFSIPPVCHPREPLTFDMDIRFQQVSDPVAAEFSLNTQMFLLSK
KELWLSDGSMGFGEGTDTAFMEGSKIFGRVMVDPVQNLGDSFSCSIEKVFLCTGADGYVP
KYNPTNKEYGCLADAPSLLYRLKILDKAQPETQATTFGNVQFDASLALDTPEALPLVRQT
GSDGFTLSSSPLFQVAAGREWFIHTIYTLRSRENANRGIGKRSLEYHHAISSAIADPGTQ
SRNRRAVPDPEAFDIGAENNRGTNIQHITIDRSNRLRVSQPWGHETDLEHPLVEGSLGKG
PGSDFSLPAGMSTLLGVAGLILLVCLVVVLVVLLMRRKRKEKKYPTYSTSSCTAYNKKPT
RHNVDSSEV
NT seq
9390 nt
NT seq
+upstream
nt +downstream
nt
atggctggttgtctgcaaagaggaagactgagtgcagcaggcgcacctctgaagtgcctg
gttattttgatttcattaggatgttgtctctctaaagtggacgcagatcctttcgacaca
gctttccgccatagtcacagacctggacctaccgttgaaacaatcttggtagccaacaat
gggattagagttccctttggacgctccatctatctggattctatcaatgaccttgtgact
gaagtgcacgcaggagaccgctgtcacattacagttctggacaatgacccactggctcag
agacctggaatgctaacacccaagaagttcccctgtgcttttggtgcagaagaggtgaaa
tatactcactttggttcccggagcccaagcaaagaccacattaaactgcaactgaggtat
gactccaacacagacacagtggtggttcctctgattcttgaagtagaagtggtctttcag
caactggagattgtcactcgtaacatgcctctggttgtggacaagctcaatgggctaagc
aacccaattgacaaaaaaactttggagtttgcatttgaagatggtgtcactacatgcaag
gtgaccacactggttggtgcaggcaaacttcccaggtatggtggtcttactgataactct
gttaatggccagatgattaattgcgatgattttgtcaagaagggaattcagtatcaacac
accgcaactaccaactcacctaacagagactacattccaatgcttgtggaagtacaagat
aatgatggtaatactattcaacaagaacatttccagataatggttagaatcaaagagggt
aatgaaaatacaccaccaaaacctagctttatatctatgatgatgatggagattgaccag
tttgtgatgacagccattactttggatatgctggcagctgaggatattgaatcagattct
gatgaattaatctttaacataacatctcccttgggctatcagcagggctatattatcagt
acagatgatcaaaaccagccaatcacttctttccatcaaagagatattaaagatctaaag
attgcttacaagcctccctctgaggattcagacttagaaagaattttccagattgaattt
gaaattgttgatactgatggggctgtttctgatccttttgcgttcatgattgttgtgaag
ccaatgaacactttagctccggtagtaaccaaaaatacaggacagctgctttttgagggt
caatcaagaccactatccagctcacacaatttagagatcagtgatgaagataatcttgat
gatgtgaagattactgttattgatggcttgaaacatggagagctaactgtgctagggtct
caacgaaatttttttactacagctgatctagatgcaggcattgttgtgtaccagcacgat
ggaagcgacacttacagtgacaacattatattcagaatgactgatggaaatgatgaagta
gagtttttattccccatcacaatagccccaactgatgatgaaccccctattataaatgca
aacactggtattgtgctttttaaaaatgaagtgatgcaaatctcaccctttatcctgagt
gccactgacattgactctgaggattcaacaattaaattcatattagaagagccattctca
gcaattggagagttgctcataaaacaggtggagcctcctccagatccatctgcatggaaa
tttagtgcaacagatgagatgtttgaacaggtggtgacagaatggtttcagcaggatatt
ctggatgggaagctgttctatcgtcacacaggtcctcatagtaccaccactgtgattgac
cagtttgcctttagagtccaggatgacaatgacccaccaaatcaatcaggagagcatgtg
ttcataattaaaatcaacccggtggatgacattcctccagaactttactctggcaccaca
ttacacatgacagtcaaagaatatgagctgacattttttaagaagaaatttctacgttac
acagatctggactgtgatgacagggatcttaaatacaccatcatcaaacctcctactgac
acagatgaaaacagccctgttcctcttggtgccattgtactgactgatagccctgacatc
ataatcagtgagtttacacaagctcaggtcaaccaccataaagtggcatacaaaccccca
gaccaagagctcggtattactccaaaagtggtccagttttcattcagtgtggaggacact
gctagtaattctgttgatggactttttacaatctttttacagcctgttgacaacaaaccc
cctgtaattactaacactggtttcactgttctggagcgaaatacttatataataaccaaa
aatgaacttgatgcctctgaccaggacacggatgatgagaatattaaatttatagtgacc
cagattcccaggtttgggcagctgcaatatttaggaattgacatgtccaatggggaaaca
tttgtgttggaggacattgaaaacagccgactggcctacatccacagtggtgaagaatct
cttcacgatgccattaagctggacattagcgatggcttccatgaagtccccattgttgtc
aagatcagcatcaagcctgttgatgatgaaactccaaaaattatgttaccggcaggtttg
ttaggcacgtccattgatgtacttgagaatggtgcaacagaaatcaccagcaatgttatt
cagggtcgtgatgaagacacagatgacctcatgctgactttcatagttgaggagcctcct
aagctaggagaaataatggtgaatggagctcctgctgagcgcttcacccagcaagacata
attaatggcgtggtcgtctatgttcacactagtggtgaaattggccccatcaaagagcat
gattccttcaatctcacaatatctgacatgtcagatgaatgggttgttggtggcaacaaa
gttcaaggggtccgtgtccaagtcaccattcttcctgtagacagcattccacctattgtt
aatgtaggtggccaatttgtagtagtcgagggtgagaaaaatgttatcacattggagcac
attcaagctgaggacattgacactgataatgatgatatcttgtgtactatcatcgttcag
tccacatctggctatgtggagaacatttccccagctcctgggtctgaaaaatccagagta
ggcactgccatcactgcattcaccattaaagatgttagtctaggccacatctattatgtc
caaagcattcataagagtgttgagccagtggaggacagatttactttccgctgctcagat
ggcattaacttttcagaaaggcactttttccccattgtcattatcccagccaatgacgaa
aagccagagattttcatccgtgagtttgttgtcatggaggggatgagtttggtcattgac
acacctattttgaatgctgcagatgcagatatcccaagtgatgaattagtttttgaaata
cttaaaaacccaaaacatggaaacattgttcagcagttgagcactgggacagttccagtg
gtgacatttaccttagagcagatcaaggaggcttccaatattgtttatgagcatgatgac
tctgaaaccaaggaagacagttttgatattcgactcactgatgggaagcacactgttgaa
gagaaggtcatcataatggtcattcctgttgatgatgaaaccccaaggatggccatcaat
gatggcctggaagtagaaattggagaaaccaaagtaattagtaacagagtcctgaaggcc
acagatctggattctgaagacaaagagcttacttacattatccgttatggccctggccaa
ggctaccttcatagaattaccaaacatggagttgtaattggcaacattagtattggaatg
aatttcactcaagatgaacttgacaaacagttgatccagtacgttcacacaggccaggag
ggtgtccgtgacctgctaaagtttgacataacagatggaatcaatcctctcattgatcgg
tacttctacattaatattggcagcatggacatggtcttccctgatgttatcaacaagggt
gtgacactcaaagagggaggtaaggtcaccttgaccacagaccttctcagcacaactgac
atcaacagtccagatgaatatctaagtttcagtattactcgtgctcctagcaggggccat
cttgaaagtactgatctcccaggggtgcccatctccaccttcactcagctgcagttagct
ggaaacaaggtctactacatccatacatctgacgatgaagtaaagatggacagctttgag
tttgaggtgacagatggctataaccctgtcttccgcaccttccgtgtatccattacagat
gtcgacaacaagaagccagtcttgacaatcaacaagcttgtgctgggggagggagaaacc
aagctgatcacaccctttgaactgacagtggaggaccgtgacacaccagacaacctgctg
cgatttgtagtgactcaagtgccagttcacggtcagcttctgttcaatggaacacaagtc
attacttcattcaccaagcaggatctaaatgaaaaccgtataacttataggcatgatggc
acagagacaaatgaagacagcttctccttcacaattactgatgggacccacacagaattt
tacgtttttcctgatactgtatatgaaactcgtaagcctcagatgatgactattcatatt
agcacagtggacaatggggtgcctcaaatcattgtaaacaaagcagcacccactcttagg
gttcttcatactgggcaccttggatttttgattaccagcaaagctctaaaggctgaggac
agagacagcccaaacaaagtgcttcagtatgttgtaaccgagacccctcttcatggcttt
atcatgaattctgctttggggaatgatagcatcaattccttctcacaggctgatattgat
gatatgaagatttgctatgtgcttcttgatgggtccaatgccacaagtgacatattctac
ttcagagtggaagacaatggtggcaacaaattgaagccacagccgttccgtctgaattgg
gcctggatatccctggaaagggaatactatattgtggatgaggatgcaaagtttctggaa
gtcaccctcaaacgccggggatacttgggagagacatcatttgtcagcattgccaccaag
gacggcacagcaaaacaggacaaagacttccgtggaaaatctcagaagcaggtccagttt
aaccctggtcaaacatccgctacctggagggtgaagatatttaccgaccaagagtttgaa
acttcagagatgtttaaaatccagctctcagaaccagtgatggctgttcttgaataccct
gatacagccactgtggagattgtggatcctggtgatgagtccacagtgttcttccctcaa
gcagaatatcgtattgaagaggatataggagaactactagtcccagtccgcagatcagga
gacgtcagccaggaactaatggttatttgttacacacaacaaggcagtgcaaccggaacc
acccccagcacagtgctttcctattcagactatatcacaagacccgaggaccacaccagt
gttctgcgctttgataaagatgagcgggagaagtcgtgtcgcatcataattattgatgac
tccctctatgaggaagacgagagcttcaatgtgtccctcagtatgctcatgggtggccaa
gtgggagccaagttccccaacgccaaagtggtcatcttgcccgatagtgatgatgagcca
tctttctattttggggagaccgagtacacggtggatgagagtgatggttatgtggaggtg
aaagtgtggaggactggaactgacctttcgaagacagccaccgtcacagtccgttccagg
aagagtgaccctgtttcagcagaagcgggtctagattatgtgggaatcagccgtaacctg
gactttgctccaggtgtgaccatgcagactttccgtgtgactattctcgatgacctgggc
cagccagagctggaggggccagagacgtttgagctggtgctgcgtatgcccatgaacgca
gtccttggagagcctagcaaaactgtcattactattaatgacactgtcacagacttaccc
aaagtccagtttagggaggaagagtacaaggtggatgaggctgatggagaggtgaaggcg
atggtgtaccgcagtggcgacattagtcagaggtccacagtcctctgttacactcggcag
ggatctgcccaagtcatgatggattatgatgaacgacccaatactgacgcatccatcata
gtgttcctaccaggggagattgagaagccatgtgttgtgactttagtggatgacacagtt
catgaagaggatgaggagttccgcttggttttggggacagctaagagcaaatcaccatat
ggagcttcagtaggagaacaaaaagaagctctggtcaccatcactgaccataaggataag
tccatcatcaggtttgctgagatcaaatacagtgttagagagccacaacttcctggagag
attgctgtagtgaagattcctgtcctgcgtcagggtgacacctccaaggtctctgtggtg
agaattcacaccaaggacggctctgcaacatcaggagaggactacaatcctctttctcaa
gatgtggaatttaaggagggtgagacagagcatgtggtggagatccaggttctgtatgat
ggacaaagagagatccgtgaggctttcactgttcacatgaagcctgacgagtatatggtg
gctgagacacagatgagtaaggctattgtgtacatcgaagagatgaatagtgtggctgat
gtcaccttcccagcagtgcctcaggtggtgtcgttgctgctgtatgatgatacgattcgg
gctaaagacaatccccaccctccaactggctatcctgttgtgtgtgtcacggcctgcaac
cccaaatactttgactttgacaagactggctccatttgttcagtggagaacataaatgac
acactaactcagtaccgctggatggtcagtgcccccagtgggccggatggagtcaccagc
cccatgcgcgaagtggataccaacaccttcttcactaacaccaagtccatcactttggac
tccatctacttccaggctggttcccgtgtacagtgtgcagcccgagccttcaacgccaat
ggagatgctgggctggagctcagttcgcccattgtggtcatcagccgagaggagggcctg
tgtcagcctcgtatacctggaacagtgggtgctgaaccgttctcagctaaaatccgttac
actggcccagatgaccctgactaccccaatctgatcaaactcactgttactatgccgcac
atggatggcatgctgcctgttatctccacacgtcccctttcaaactttgagctaaccctt
agtccagatggcacacgagtaggaaaccaccgctgctctaacctcttggatttcaacgag
atccaaacagcacatggttttatcaccgacgccacaaagaacccagaaattattggcgag
acttcaccgtaccagtacagcgtggccatgcgtagcaccaattcccttcgattctaccgc
aaccttaacctcgaggcatgtctgtgggagttcagtagctactacgacatgtcagagctg
ctgaatgactgtgggggatcgattggcacagatggacaggtgctgaatctggttcagtcc
tatgtaaccctgcgggtgcctctgtttgtgtcctatgtctttcactctcccgtcgcggtt
ggcggctggcaacattttgacttacgttctgagctgcggctcacctttgtgtatgacact
gccatcttatggcaagatggtattggaagcccaccagaggctgagctacaaggtgccatg
tatcccaccagcatgagaataaatgatgaaggacgtcttgttgtcaacttcaagactgag
gcccgatttagaggacagtttgtcatgtctcacccaggaaccactttgtcctctatggta
atgtcagcggaccaccctggactcacattcactctctccctggtcagaactgagcccact
tacaaccagcccatgcaacaatggagcttcgtttctgactttgctgtgagagactattcc
ggcacctatactgtgaagatgattccatgtagcgcttcacctaatggggagttcagcata
ccccctgtgtgccacccgagggagcctctcaccttcgacatggacatccgcttccagcag
gtgagtgacccagttgcagcagagtttagtctgaacacacagatgttcctgctgtcgaag
aaggagctgtggctgtctgatggctccatgggctttggagagggcacagacactgccttc
atggaaggttctaagatctttgggcgtgtgatggtggacccagtgcagaacctgggtgat
tctttctcctgcagcatagagaaagtgttcctttgtactggtgcggatggctatgtacca
aagtacaaccctacaaataaagagtatggatgcctggctgatgctccatccctgctttac
agactcaagatcctggacaaagctcagccagaaactcaggccaccacatttggaaatgtc
cagtttgatgccagcttggctttggatactcctgaagccctgcctttggtcagacaaact
ggatcagatggtttcacgctgtcatcatctcccctcttccaggtcgctgctggccgggaa
tggttcatccacaccatctacaccctccgttctagagagaacgccaaccgaggcattggt
aaaagaagccttgagtaccaccacgctatatcctctgccatagctgaccctggcacccaa
tcccgtaatcgtcgtgcagtacccgacccagaagcttttgacattggtgctgagaataac
cgaggcaccaacattcagcatatcacaatcgaccgctcaaaccgactccgggtgagccag
ccatggggtcatgagactgacctagagcaccccctggtggaggggagcctgggtaaaggt
cctggttcagatttttctcttcccgctggcatgtccacattgctcggggtggctgggctc
atcctgctggtatgcctggttgtagttctggtggttctcttgatgcgacgcaagcggaaa
gagaaaaagtacccaacttattccacttcgtcctgcacagcatacaacaagaagcccaca
agacacaatgtggacagctctgaggtttaa
DBGET
integrated database retrieval system
