Rhinichthys klamathensis goyatoka (western speckled dace): 130105760
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Entry
130105760 CDS
T09701
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130105760 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130105760 (smarca4a)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130105760 (smarca4a)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130105760 (smarca4a)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
130105760 (smarca4a)
Chromatin remodeling factors
BAF complex
130105760 (smarca4a)
PBAF complex
130105760 (smarca4a)
GBAF(ncBAF) complex
130105760 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
130105760
NCBI-ProteinID:
XP_056127894
LinkDB
All DBs
Position
Unknown
AA seq
1623 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGMLGPSPGPSPGSAHGMMGPSPGPPTSGHPLPPQG
PSGYPQDNMHQMHKPMEGMHEKGIPEDQRYAQMKGMGMRQGGHSGMGPPPSPMDQHSQGY
PSPLGGSDHAPSPVPSNGPPSGPMMPSGPGAVPMEGGDPQNRSVGAGGVAGSGPSGGPPN
AGGPGGPGGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQGMPN
MPPASGQGAGPLGPGGPVPGGPNYNRPPGMVGPNMPPPGPSGVPPGLQGQPTNGPPKSWP
EGPMVNAAAPASAPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPMVLHQ
KQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQDLENLPGSLAGDLRTKANIELKAL
RLLNFQRQLRQEVVVCMRRDTALETALNGKAYKRSKRQSLREARITEKLEKQQKIEQERK
RRQKHQEYLNSILQHAKDFKEYHRSITAKMQKVTKAVATYHANTEREQKKENERIEKERM
RRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKDMKKKKKKK
KKKKPENAEGVPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGMDAPKAGQLDTWLEV
NPGYEVAPRSDSEDSGSEEDEDDDEEHQPSQAPTEEKKIIPDPDCEDVSEVDVQHIIEHA
KQDVDDEYGSAAFARGLQSYYAVAHAVTERVDRQSSLLINGQLKQYQIKGLEWLVSLYNN
NLNGILADEMGLGKTIQTIALITYLMEYKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVK
ISYKGSPAARRAFLPILRSGKFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHC
KLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG
EKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHM
QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQ
GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTK
AEDRGTLLKNFNDASFNYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAH
RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL
EHEEQDEEEDEVPDDETVNQMIARSEEEFDHFMRMDLDRRREEARNPKRKPRLMEEDELP
TWIMKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLDEIEEEV
RHKKTTRKRKRDRDLDLPGPATPSSSGRSRDKDDDSKKQKKRGRPPAEKLSPNPATLTKK
MKKTVDAVIKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHKYRSL
NDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEVESEGEESEEEEDEV
DEGSESESRSVKVKIKLSRKDKVERGKGRRRTGRSSRPKPIVSDDESEDDQEEEHSISGS
DDE
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctgacccacctatgggtgggacccctcggccgggcccttccccgggccct
gggccatctccagggggcatgttagggcctagtcctggaccctcacctggctctgcccat
ggcatgatgggccctagccctgggccacccacctcaggacacccactacctccacagggc
ccctcaggttacccccaggacaacatgcaccagatgcacaagccaatggaaggcatgcac
gagaaaggcattcccgaagatcagcgctatgctcaaatgaagggtatgggcatgagacag
ggtgggcacagtggcatgggacccccacccagtcccatggaccaacactctcaaggttat
ccctctcctctgggcggttctgatcatgcccccagcccggtaccttctaacggccctcca
tctggccccatgatgccttctggtcctggtgctgtccccatggagggcggtgacccgcag
aaccggagcgtaggtgcaggtggtgttgcaggttcgggacccagcggaggacctccaaat
gcaggtgggcctggtggacccggcggacccactcctttcaaccaaaaccagcttcaccag
ctgcgggcacagatcatggcctataagatgctggcgcgtgggcagcctctacctgaccac
ctgcagatggcggtacagggaaagcggcccatgccaggcatgcagcaggggatgcccaac
atgccccctgcttcaggacaaggagcaggacctcttggaccaggtggccctgttcctggg
ggacccaattacaatcgacctcctggaatggtcggtccaaacatgcctcctccaggaccc
tctggtgttcctccaggcctgcagggacaacccaccaatggaccacctaaatcttggcct
gaagggcccatggtgaacgctgccgcccctgcaagtgccccacagaagctaatacctcct
cagcccacgggccgcccttctccagcgccaccttcagttcctcccgctgcctctcccgtc
atgccccctcagacccagtctccgggacaaccggcccagccgcccatggtcctgcatcag
aagcagaaccgcatcacacccatccagaaacctcggggtcttgacccagtggagatcctc
caggagagagagtacaggttgcaagctcgtattgctcatcgtattcaggacctggagaac
cttccaggctctctggctggagacttgaggaccaaagccaacattgagctcaaggcactt
aggctcctgaactttcagagacagctccggcaggaagtcgtagtgtgcatgcggcgcgat
acggccctggagaccgcactgaacggcaaggcctacaagcgcagcaagagacagtccctg
cgtgaagctcgcatcactgagaaactggagaaacagcagaagatcgagcaggaacgcaag
cggcgacagaaacatcaggaatatctcaacagcatcctgcagcatgctaaagacttcaag
gaataccatcgctccatcaccgcaaagatgcagaaagtgaccaaagccgtcgccacgtac
catgccaacactgagagagagcagaagaaggagaacgagcgtatcgagaaggagagaatg
agaaggctgatggctgaagatgaagagggttacaggaagctgatcgatcagaagaaagac
aaacgtctggcttacttgctgcagcagacggacgagtatgtggccaacctcaccgagctc
gtcagagctcacaaagctgtccaggccctcaaagacatgaagaagaagaagaagaaaaag
aagaagaagaagccagagaacgcagagggtgttcctgctctcggtccagatggagagcct
ttggatgagaccagtcaaatgagtgatttaccggtgaaggtgattcacgtggacagtggg
aagattctcaccggcatggacgctcctaaagctggacagctggacacttggctggaggtg
aatccagggtacgaggttgccccgcggtcagatagtgaagatagtggctcagaggaggat
gaggatgacgacgaggagcatcagccctctcaggccccaacagaggagaagaagatcatt
ccagatccagactgtgaggatgtgtctgaggtggacgtccagcacatcattgagcatgcc
aagcaggatgttgacgatgaatacggcagcgcagcgttcgctcgcggcctgcagtcttac
tacgccgtggctcacgccgtcacggagagggtggatagacagtcgagcctgctaatcaac
gggcagctcaaacagtaccagatcaaaggtctagagtggctggtgtctctgtataacaat
aacttgaatggcatcttggctgatgaaatgggtttgggaaaaaccatccagaccatcgca
ctcatcacctacctcatggagtacaaacgcctcaacggacccttcctcattatcgtcccc
ctctcgactctgtcgaactgggtgtacgagtttgataagtgggctccatctgtggtgaaa
atttcttacaagggctctcctgctgctcgccgtgcgttccttcccattttgcgcagcggc
aagttcaacgtgcttgtcaccacttacgagtacatcatcaaagacaagcaagtgctggcc
aagctccgctggaagtacatgatagtggacgaaggtcaccgtatgaagaatcaccactgt
aaactgactcaggtgttgaacacacactacctggcgcccaggcgtgtgctgctcaccggc
acgccgctgcagaacaagctgcccgagctgtgggcgctgctcaacttcctgctgcccacc
atcttcaagagctgcagcaccttcgagcagtggttcaacgctccgttcgccatgactgga
gagaaggtggacctgaatgaagaagagaccattctgatcatccgtcgtctgcacaaagtg
ctccgccccttcctgctcaggagactcaagaaggaagtggaggcccaactgccggagaag
gtggaatatgtgatcaagtgcgacatgtcggctctacagagagtgctgtacagacacatg
caggctaaaggagtgctgctcactgacggctctgagaaagacaagaagggtaaaggaggc
actaagactctgatgaacactattatgcagttgaggaagatttgtaaccacccgtacatg
ttccagcatattgaggaatctttctctgagcacttgggcttcactggaggcattgttcag
ggacttgatttgtaccgtgcctctggtaagtttgagctgctagaccgtatcctgccgaag
ctccgcgccaccaaccacaaagtgctgctcttctgtcagatgacctcgctcatgaccatc
atggaggactacttcgcctaccgcaacttcaaatacctgcgcctggacggaaccactaag
gctgaggatcgtggcacgttgctgaagaactttaatgatgcttcctttaattatttcatc
ttcctgctgagcaccagagcaggaggtctggggttgaacctgcagtcagctgacactgtt
atcatctttgacagcgactggaaccctcaccaggatctgcaagcccaggatcgcgcccat
cgtatcgggcagcagaatgaggtgcgtgtgctgcgtctgtgtaccgtgaacagcgtggag
gagaagatcctggccgctgccaaatacaaactgaacgtggaccagaaggtcatccaggcc
ggtatgttcgaccagaaatcctccagccatgagcgcagggctttcctgcaggccatcctg
gagcacgaagagcaggatgaggaggaagatgaagttcccgatgacgagaccgttaatcag
atgatcgctagaagcgaggaagagttcgatcacttcatgcgcatggatctggaccggcgt
cgcgaagaggctcgtaacccgaagcgcaaaccccgtctgatggaggaggatgagctgccc
acctggatcatgaaggatgatgcggaggtggagaggctcacctgcgaagaagaagaggag
aagatgttcggccgcggctcccgtcagaggaaggaggtggactacagcgactccctcacg
gagaaacagtggctgaaggccatcgaggaaggcacccttgatgagattgaggaggaggtg
cgccacaagaaaacgacccgcaagaggaagcgtgaccgtgacctcgaccttccaggccca
gccacgcccagctccagtgggcggagcagagataaagacgacgacagtaagaagcagaag
aaacgcggccgtcctcctgccgaaaaactctctcccaaccctgccacgctcaccaagaag
atgaagaagactgtggatgccgttatcaaatacaaggatggcaatggtaggcaactgagt
gaggtgtttattcaactgccgtctcgtaaagagctgccggaatattacgaactcattcgc
aaacctgtggacttcaggaagattaaggagcgcatcaggagccacaagtaccgcagtctg
aacgacctggagaaagacgtcatgctgctttgccagaacgctcagaccttcaacctggag
ggatcactgatctacgaggactctatcgtgctgcagtctgtgttcaccagtgtgcggcag
aagatcgagaaagaagtagagagcgagggagaagagagtgaggaggaagaggacgaggta
gatgaaggatcggagtctgaatctcgttccgtgaaggtgaagataaagctgagtcgaaag
gacaaggtggagagagggaagggaagacgccgaactggacgcagctcgcgccctaaacct
atcgttagcgacgatgagagtgaggacgaccaggaagaggagcattcgattagtggcagc
gatgatgagtaa
DBGET
integrated database retrieval system
