Rhinichthys klamathensis goyatoka (western speckled dace): 130105785
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Entry
130105785 CDS
T09701
Symbol
dchs1a
Name
(RefSeq) protocadherin-16
KO
K16507
protocadherin-16/23
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
130105785 (dchs1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130105785 (dchs1a)
Cell adhesion molecules [BR:
rkg04515
]
Cadherins
Cadherin related
130105785 (dchs1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Ig_Cad99C_N
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_pro
RIFIN
CADH_Y-type_LIR
FeoB_associated
DUF7190
TMEM154
Motif
Other DBs
NCBI-GeneID:
130105785
NCBI-ProteinID:
XP_056127942
LinkDB
All DBs
Position
Unknown
AA seq
3282 aa
AA seq
DB search
MKREGRTIMDPLHQNRTLKWWILVILYVALHLMTIQSSMAPGTLQLQLDEEQPAGTVVGD
ISAGLPPDMIATHYFISDHQGTGVGTDLDIDESTGIIKTAKVLDREVRDRYSFIAVTMTG
ITVEVTILVNDINDHAPVFPRKRATFKIPEQTTIGTKFPLDPAVDADEDQLTTQGYIITD
GNVGQAFLLETKRGSNKVLYLDLVVNAVLDRETRSSYTLLLEAFDGGSPKRTGQMILDVT
VQDINDNAPVFNQSRYHAMISENLQPGNNILQVFASDADEGDNGLVLYDINRRQSDPDRY
FVIDSRTGVITVNKPLDFEMRRVHELVIQARDNASQPEITNAFVTIQVRDYNDNQPTMTI
IFLSEDGSPHISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSIIYLI
CVDKILDREEQDHYELRVMATDSGTPPLRAESSFTIQVTDVNDNPPLFDQQEYTQVIPEV
AFPGSFVVQVTARDKDQGPNGDVQYNILQTEGTHSDWFSVDTITGIVTTLTQLDYETDPI
PSVTVVANDRGRPPLSSTAVVKVILQDINDNEPVFASKFYNASIKENAAAGTCFMEVTAT
DADGGSFGSISYSLGSGPGSVTPSQFTVGKHNGQICTTTSLDRDQGSANYDFTVTAVDGG
GLNSVTYVRVDLIDINDNRPAFYPLSYAVSLSTQSTPGTSVLKVTAHDPDAEENGRVTYR
TVPGGSSPFFTLNKDTGVISLSRALHGKANSVITMVVSAQDGGGLTAPINARVNISIVAG
LVAPPVFEQAQYFFLVSEDALRGTQVGVVRASTKNGVSKEISYTISSGDPMGYFTVDSET
GALRTSLPLDHESQPSLNLEVQAHCGNPPAFGQTRVRITVSDVNDNSPVFLPSSSESLIL
PEDTRMGTVVYKVQAEDRDSGPNGLLSFDIFSGGAQRTFSIDRNSGHIRLIGGLSYETIP
RYDLQVIAKDSGAPQLSSTFTLVIHVQAENGQGPMFDSLTYRVELKESTPLNTRFLQVRA
VNRDGGITAGPSSTFSTPLAYHLHPDGDAAGFGIVSESGWLFVKSALDREAKEMYLLTVL
ATSGNGQLKKTGSATVRVSVMDENDNTPRFTQERAFLALRENLPVGTGFGRVSASDRDAG
LNGRLSYRLLHLDRHFQINSHTGEISTKLSMDRELQSSYQLIVVAQDGGTPARSATGTAF
ITVLDENDNAPSFSHAQTGRELLLQALEGQPSGFLLGTIHAKDPDEGENGTIFYSMSGPR
AERFTLNPNTGELRSSSPLSHSERPEYSFIVLASDRGSPPQSSTITLKIQVLSSSKGSAT
ANSQPLTLNSVEGAKPGSIVGSVRSPDSQTLPEAGQVTYTVVGGTDFDGTFVVERQTGDV
YLARELDFEKAPRYTLQVEVDDFSMPLPKSHIVTVVIDVQDSNDHAPEFPEDPVIIVVPE
SADPGSTIYTFQAIDKDGSGPNSEVHYFILQQWPNVPDLLFLDPTTGVLSLGMMLDHERT
SSLLLVVQATDSAPDVSQRRRGTVTARIFVTDVNDNGPVFISPSVVSVMEDQPVGFVVVY
VMAVDADQGENGRVTYRIQSGNTGAKFSLNPDTGSLSILRPIDREEQDLYNLTIVAEDHG
LQQHSSSQLLSIQVIDVNDEAPYFEESEYEAFIAENQPAGTTVLVVSASDMDQGTNGIVM
YGSIVGDDFSIHPVTGVITTSKALDREAQGVYAVTVYARDGGSPPNFAKTTVRVTVLDEN
DNRPAFGRVYYSLEVPENQEPVTLFTIRATDQDSGDSGVVHYKITEGDHFGDFHLDRKSG
VLSTSRPLDRESKAKYTLTVEAQDQGIPPLTSTVTLDINVLDLNDNSPVFPSSSYSVEVS
EDASEGSFVLEVSASDKDEGSNSQVVYFLSRESRGMFIVDQHTGRIITAAALDREKVASY
SFQIYAMDSSAANPRNTSAEVTVQVLDVNDNAPFFITDPLIINVSSSSLSNRKVLATMRA
EDKDFGANGSVFYRFANPVKGFTINSLTGDIQATEKLHALTQSQRTLIVEAMDQGNPSQS
SLGVVVVYIREQSYQGIRFSRNTRDVSLQENAAKGTAVVQIQAHYPDGSSSGINYSIFSG
NKLQSFSISPHTGEIWVESSMGLDFEENPRLRLVVKAETASSSSFMAVNLLLQDVNDNLP
RFQLHNYVAYVREAQGYDHPIIQVLANDLDQGQNGQVTYSIRSSSMSGLFKIDPVTGSIS
TAAIMDREIWTQTNLVIMATDRGSPRLAGSATLTVIIVDLNDNSPTIPVPHDIRIPENTL
IGTVITQVTGNDVDSGPALSYSLLLDSDTQGKFGIHRFGGGVSLTASLDFEERTWYMLTV
SSSDTKQQSYANLTVLVEDVNDNAPVFSQDLYEVTLAEHSPAGSSVITVTATDKDSGENG
RITYRIVSTKDMFYIDPSNGTLFIKQKVEFDSQRPSILVVIEASDSGTPPLSTLSTVQVH
VSDVNDNAPVFHQTEYRASVSEDEVPGSTILTLEAVDGDLSRDNCGFDFAIASGNIGNAF
QIESSVRFLEGHGFQTVGALILVDKLDFEIVNGYNLTIVVSDRGIPQQSSNVPVLITVMD
TNDNPPSFSRAEYKVVVNERAETGTEILKLFAVDPDSTPNGEVQYSISSGDESELFSVDR
WTGSLRLRRSLDSEEQSSYMFIIQASDGQGHFALAPVTVEVKDINNNRPYFPLKLLTASI
RENQPQNALVTILHAIDHDKGAYGELRYLLMYNSGNGKDSFLVNQTSGEVRTRFTFDFEK
INTFNFIAMAMDAGNYSSTVTVQVFVTGEDEYDPIFTNSDFTFRIPEGAKKGQSIGQVNA
NDEDGGVDGIVLYSLTNSSPYFEVNTSTGVISLKMDAYHRHISRSKRETRQMTLDVIAHS
PLENSRKASAQITIDVTHTSFGLNTDMNVVLASAITASLAAIVFLIIVVVVIFLLRSQRY
KKQETCTRIVNNGTVLESLEESKVQEDDKLYHQTLPGYATDQTGNGGGTYTRGGSLDPSH
SSGRGSAEAEAAEDDEIRMINEYPRVSSISSSMQEHIAARGPDSGIQQDADQLSDISCEP
GMDANQWFKGKKLGSLSGTMLSSQLPTYRDEGGGYLGVGRGLNISHPKDYAFPEDGKPAV
DGSLTAIVASDEELRGSYNWDYLLDWCPQFQPLANVFTEIARLKDENAPPNSRRPFHPKA
KTDPKPRIDPPPLITSVAHPGAKTVLPKPAVGRTFPHLSSLRRSPIDHDGSVSSIAMSPS
FSPSLSPLSAHSPAIAPFGGHSSSIINTTDHSFEHEETELRI
NT seq
9849 nt
NT seq
+upstream
nt +downstream
nt
atgaagagagaaggaaggacaattatggatccattgcatcaaaacaggactttgaagtgg
tggatattggtgattctctatgtggcactacacctcatgaccatccaatcatctatggcg
ccagggacattgcagctccaactagatgaggaacagcctgcaggaactgtagtaggtgac
atcagtgctggcctcccacctgacatgattgcaacccactatttcatctcagatcatcag
ggtacaggtgttggcactgatctggatatcgacgagagtacagggatcataaaaacagca
aaggtcttggaccgagaagtacgggaccgttacagcttcatagcagtcaccatgaccggt
ataacagtagaagtcaccatcttagtcaatgacatcaatgatcacgcaccagtgttcccc
agaaaaagagccacctttaaaatcccagagcagacaaccataggcaccaagtttcctctt
gatccggctgtggatgcagatgaggaccagctcactacgcaaggttacatcataacagat
ggaaatgtaggacaagcttttcttcttgaaaccaaacgaggatcaaacaaagtcctttac
ttggatttggtggtcaatgcggttttggacagagagacaagatcttcgtacactctactc
ttggaagcatttgatggtggttcacccaagaggacaggacagatgatcctggacgtgact
gtgcaggacatcaacgacaacgccccagtcttcaaccagagtcgttaccatgcaatgatc
tccgagaaccttcaacctgggaacaatatactgcaggtgtttgcttcagatgccgatgaa
ggtgacaatgggttggttctctatgacatcaacagaagacagagtgatcctgatcgctac
tttgtcattgactctcgaactggagttatcactgtgaacaagcctttggattttgagatg
agaagagttcatgagcttgtgatacaggctcgggacaatgccagtcaaccagagatcacc
aacgcctttgtgaccatccaggtgcgagactacaacgacaaccagcccaccatgaccatc
atcttcctcagtgaggatggttctccacacatctctgaaggagcacagccgggacagtat
gtggctaggatttcagtcacggaccctgattatggagaatatgccaatgtgaatgtatct
ttggaggggggcgatggaaagtttgctttgaccaccaaggacagcataatttatctcatc
tgcgtggataagatacttgatcgtgaggagcaagaccactatgaactccgagtcatggcc
acagattctggcacccctccgttacgggcagagtcttcatttaccattcaagtcacagat
gttaatgacaacccacctttgtttgaccagcaggaatacacccaggttattccagaggtg
gcctttccgggaagttttgttgtacaggttacagcacgggacaaagaccagggacccaac
ggggatgttcagtacaacatcctacagactgaaggaactcattcagattggttcagtgtt
gacacaattactggtattgtcaccaccctgacccagctagattatgaaactgaccctata
ccgagtgtaactgttgttgccaatgacaggggtcgaccgccactgtcttctacagctgtg
gtcaaagtgatcctacaggatattaatgataacgaacctgtgtttgccagcaagttctac
aatgcatccatcaaggagaacgccgcagcagggacctgtttcatggaggttacagctact
gatgctgatggtgggtcttttggctccatctcctactctctgggatctggtccaggctca
gtcaccccgtctcagttcacagttggcaagcacaatggacagatctgtactaccaccagc
ctggatcgtgaccagggttcagccaactacgacttcaccgttacagctgttgatgggggt
ggactaaattcagtgacatacgtgcgggtggacctgatagacataaatgacaatcgacca
gcgttctaccctctgagctatgcagtgagcctgagtacgcagagcaccccagggacctcc
gtcctgaaggtgactgctcatgacccagatgctgaggagaacggaagagtgacgtaccgt
actgtacctggagggagctcacctttcttcactctcaataaagacactggagtgatttca
ctgtcacgcgctctacatggaaaggcaaactcagtcattacgatggtggtctcagcccaa
gatggtgggggccttaccgctccaatcaatgccagggtcaacatcagcatagtggcagga
ctggttgcaccccctgtgtttgaacaagctcaatactttttcttggtctctgaggatgcc
ctgcgtggaacacaagttggagttgtgcgggccagcactaagaatggtgtctcgaaggaa
atctcctacactattagctccggtgacccaatgggctacttcaccgtggattcagaaact
ggggccttgagaacaagcttgcctctggatcacgaatcccaacccagcttgaatctggaa
gtccaggcgcactgcggtaaccccccggcatttggccagactagggtacgaattacagtg
tccgacgtcaatgacaattcgcccgtcttcttgccctcgtcctccgagtcactgatttta
cctgaagacacacggatgggtacagtggtgtacaaggtccaagcagaagaccgcgattct
ggacccaatggtcttctgagttttgacatttttagcggcggtgcccagagaaccttcagc
attgatcgcaacagcgggcacatccgccttattggcggtttgtcgtacgagaccataccc
cgctatgacctgcaggtgattgccaaagatagcggcgcacctcagctaagttctaccttc
accctggtcatccacgtacaagccgagaacggccaaggtcccatgttcgatagcctcacg
taccgagtagagctgaaggaaagcacacctctcaacacacgcttcctgcaggttcgtgca
gtaaaccgagatggcggaatcaccgctggaccatcttctacgttttccaccccactagcc
taccacctgcacccagacggtgatgctgcagggtttggcattgtgtccgaaagcggctgg
ctgtttgtgaaaagtgctttggatagagaagccaaagagatgtaccttctcactgtactg
gcaacttcaggcaacggacagctgaagaagacgggtagtgccacagtgcgtgtgtcagtg
atggatgaaaacgacaacaccccacgatttacccaagaaagagcattcttggcattgcgc
gagaacctgccggtaggcactggtttcggccgagtgtctgccagcgatcgagatgctggt
ctcaacggtcggttgagctaccgcctgctccatctggatcgccacttccaaatcaactcc
cacacaggtgagataagcacaaagctttccatggaccgtgaacttcagtccagctaccag
ctcattgtggtggctcaggatggtgggacccctgcacgcagcgctacaggcactgctttc
atcacggttctggatgagaatgataatgcgccctccttcagccatgctcagacaggaaga
gagctcttgctgcaggcgctagaaggtcaaccatctggatttctactgggaaccattcat
gcaaaagaccctgatgaaggagaaaatggaactattttctactctatgtctggtcctaga
gctgaacgtttcactctgaacccaaacaccggagagctgcggtcctcttcccctttgagt
cattctgagcggcctgagtacagtttcatcgttctggcctcggaccgaggttcaccccct
cagagctccaccataacactgaaaatacaggttctgagctcaagtaaaggatcggccacc
gctaactcccaaccattaacgctgaattctgtggagggagctaaacctggctctatcgtg
gggtctgtacgttcacctgattctcagacccttcctgaagcaggccaggtcacgtacacc
gtggtgggaggaacagactttgacggcacctttgtggtagaacgtcagacgggtgacgtt
tacctggcccgtgagcttgactttgaaaaagctcctcgatacactctccaggttgaggtg
gatgacttctccatgcccctccctaaaagtcacattgtaacagtggtaattgatgtccag
gacagcaacgatcatgctcccgagtttcccgaagaccccgttatcatcgtggtccctgag
agcgcagatcctgggtcgactatctacaccttccaggccattgataaagacggaagtgga
cccaacagtgaagtacactatttcatccttcaacagtggccaaacgtcccagatctcctg
ttcttggatccaactacaggagttctctctctgggaatgatgctggatcatgagaggacc
tcttcactactcttggtggtccaggcgactgattcggcccccgatgtcagtcagcggcgc
cgtgggacagtcacagcccgcatatttgtcactgacgtgaatgataacggccctgtgttc
atctcaccgtctgtggtgagtgtgatggaggaccagcctgtgggctttgtcgtggtctat
gtcatggctgtagatgcagaccagggagagaacggacgagtgacataccgtatccagagc
ggcaacaccggagcaaagttcagccttaacccagatacaggttctttgtctattcttaga
ccaattgaccgtgaagagcaagacctctacaacttgaccatagtggcagaagaccacggt
ttacaacagcacagcagctcccagttactgtcaatccaggtgattgacgtaaacgatgag
gcgccgtactttgaggaaagtgaatatgaagcttttattgcagagaatcagcctgcagga
accactgtgctggtcgtttcagcttctgatatggaccaagggactaatggaatcgtgatg
tacggaagcattgtaggagatgatttcagtattcatccggtgacaggagtcataaccacc
tccaaagctttagacagggaggcccaaggggtgtatgctgtgacagtttatgccagagat
ggtggttctcctcccaatttcgccaagaccacagtgcgcgtcacagtgctggatgagaat
gacaacaggccggcttttgggagagtgtactacagtctggaggtgcctgagaaccaggag
cctgtgacactcttcacaattagagccacagatcaagactccggggacagtggggtggtg
cactacaaaatcactgagggagaccattttggtgatttccacctggacaggaaatcaggt
gtgctgtccacctctaggcctttggatcgagagtccaaagcaaagtacaccctcaccgtg
gaggcacaagatcagggtataccgcccctcactagcactgtcactttggacatcaatgtg
ctggacctgaatgacaacagcccagtgtttcccagcagcagctactctgtggaggtatca
gaggatgcttcagaagggtcttttgttctggaggtttcagcctctgacaaagacgaaggg
tccaacagccaggtggtctacttcctgagccgcgaatccagaggtatgttcattgtggac
caacacacaggtcgcattattacagcggcagctctcgaccgagaaaaagtggcctcctac
agcttccaaatctacgccatggactcctcagctgccaatccccgtaacacttccgctgaa
gtgaccgtccaggtcttagatgtaaacgacaatgcccccttcttcatcacagacccgctc
atcatcaatgtctccagcagtagtctctccaaccgtaaagtgcttgccaccatgagagct
gaagataaggacttcggtgcaaatggatctgtattttatcggtttgcgaatcctgtcaaa
ggcttcaccataaactccttgacgggggacatccaggccactgagaagctccatgcactg
acccagagccagcggaccctcattgtggaggccatggatcagggtaacccatcgcagtcc
tctctgggagtggtggtcgtgtacatccgagagcagagttaccagggcatccgcttctcg
cgcaacactagggatgtgagcctgcaggagaatgccgctaaaggtacagcagttgttcag
atacaggctcactatcctgatggatctagcagtggcatcaactacagcattttcagtggc
aacaagctgcagtcctttagcatcagcccccacacaggtgagatttgggtagaaagttcc
atgggtctggactttgaggagaacccacgactccgcctggtggtcaaggctgaaaccgca
tcctccagctccttcatggcagtcaaccttctcctacaggatgtcaatgacaacttacca
cgctttcaacttcacaattacgttgcttatgttcgtgaagcccagggttatgatcatcct
atcattcaggtgttggcaaatgacctggaccagggtcagaatgggcaggtgacctactcc
ataaggtcatcatccatgagtggcctcttcaagatcgaccctgtcacaggcagtatatcc
accgctgccatcatggacagagagatctggacacagactaacctggttattatggcaaca
gacagaggcagtcctcggttagcaggttctgccactctcacggtgatcattgtagacctg
aatgacaacagtcccaccatccctgttccacatgacatccggatccctgagaatactttg
attgggaccgtgatcactcaggtcacagggaatgatgtggactctgggcctgctctttcc
tattcccttcttctggactcagacactcaagggaagtttggaatacaccgctttggagga
ggtgtgtccttgaccgcctctctggactttgaagagagaacatggtacatgctgaccgtc
agctcctcagacaccaagcaacagagttatgcaaatctgaccgtgcttgtggaggatgtg
aatgataatgctccagtcttctcccaggacctttacgaggtgactctagcagaacactcg
ccagcaggaagctcagttatcacagtaactgctacagataaggactctggagagaacgga
aggataacatacaggatcgtgtcaacaaaggacatgttctacattgacccaagcaatggt
actctgttcatcaagcagaaggttgagtttgactcgcagcgcccttccattttggtggtg
attgaagccagtgatagtggaacaccaccgttgagcacccttagcacagttcaggtgcat
gtgtctgatgtcaatgacaatgcccctgtattccaccagactgagtacagagcatctgta
tctgaagacgaagttcctggttcgaccattctaaccctggaagcggtggatggggactta
tctagggacaactgtggctttgattttgccatcgccagtgggaacatcggtaatgccttc
caaattgagagcagtgttcgcttccttgagggccatggatttcagacagttggagcgctg
atattagttgataagcttgactttgagattgtgaatggctacaatcttactattgtggtc
tcagatcgtggcataccacaacaaagctcaaatgttccagttttaatcactgtaatggac
accaatgataacccaccatctttcagtagggcggaatacaaagttgttgtcaatgaaagg
gcagaaacaggaacagaaatacttaaactttttgctgtggaccctgactcgacacctaac
ggagaggttcagtattcaatcagttctggagatgaatctgagctcttttctgtagatcgg
tggactgggtcccttcgtctgcggaggtctcttgatagtgaggaacagtcttcttacatg
ttcattattcaggcctcggatggtcagggccactttgctcttgctcctgtaactgtcgag
gtcaaggacatcaataataaccggccttactttcctcttaaattacttacagcaagcatt
cgtgaaaaccagccccagaatgcgctagtaaccatattacatgccattgatcatgacaaa
ggagcatatggagaactgagatatttactgatgtataattccggcaatggtaaagattcc
tttctagtgaaccaaacctccggtgaggtgcgaacccgctttacattcgactttgagaag
ataaacactttcaattttattgccatggcaatggatgcaggcaactactcttctacagtc
acagtgcaagtttttgtgactggtgaagatgagtatgaccccattttcacgaactcagat
ttcaccttccgtatacctgagggtgccaagaaagggcaaagcatcggccaagtaaatgct
aatgatgaggatggaggggtggacggcatcgttctctattcactcacaaacagttcacct
tactttgaggtcaacacatctactggagtgatatccctcaagatggatgcctatcatcgt
catataagccggtctaaaagagagacacgtcagatgacgttggatgttattgcccacagt
cctttggagaattcccgaaaagcttctgcccagatcacaattgatgtcactcatacatcc
tttggcttgaacacagatatgaatgtggtacttgccagtgctataacagcttccttggca
gccatcgtgttcctgatcatagttgttgtggtgatattcctcttgagatcccaaaggtac
aaaaaacaagagacttgcaccagaatagtcaacaacgggactgttcttgagagtcttgag
gaatcgaaagttcaagaggatgataagctatatcatcagacccttcctgggtatgcaaca
gaccagactgggaacggaggaggtacctacacacgtggtgggtctcttgacccatctcac
tctagtggacgtggttccgccgaagctgaagcagcagaagatgatgagattcggatgatt
aatgaatatccacgagtttctagcatctcctcctctatgcaggaacacatagctgctcgc
gggcctgactctggtatccagcaagatgcagatcagctgtctgacatttcctgtgagccg
gggatggatgcaaaccaatggtttaaaggaaagaaactgggaagtttaagtgggacaatg
ttgtcaagccagttgccaacttatcgggatgaaggaggtggctatcttggggttggacgg
gggcttaacatctcacatccgaaagattatgctttcccggaggatggtaagcctgctgtc
gatggttctcttacagcaatcgtggctagtgacgaggaactgagaggcagctacaactgg
gactatctcctcgactggtgccctcagtttcagcctctggctaatgtcttcacagaaatt
gcacgattaaaagatgagaacgcaccacctaactctcggcgaccatttcatcccaaagca
aagactgaccccaagcccagaattgaccctcctcccctaattacctctgtagctcatcca
ggggcaaaaactgttttgccaaaacctgctgtaggccgaacatttccccacctttcctca
ttgcgacgatcccctattgaccatgatggctctgtttcctcaattgccatgtctccaagt
ttttctccatcgctttcaccactttcagcacattcccctgccatcgctccttttggtggt
cactcgtcctccattatcaatacaactgaccactcctttgaacatgaggagacagaactg
aggatttaa
DBGET
integrated database retrieval system
