Rhinichthys klamathensis goyatoka (western speckled dace): 130105806
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Entry
130105806 CDS
T09701
Name
(RefSeq) protocadherin Fat 4
KO
K16669
protocadherin Fat 4
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
130105806
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130105806
Cell adhesion molecules [BR:
rkg04515
]
Cadherins
Cadherin related
130105806
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Laminin_G_2
Cadherin_CELSR2_9th
Ig_Cad99C_N
Laminin_G_1
Ig_CLSTN
EGF
Cadherin_pro
EGF_TEN
Sde0182_C
EGF_CA
EGF_2
GluR_Homer-bdg
hEGF
Motif
Other DBs
NCBI-GeneID:
130105806
NCBI-ProteinID:
XP_056127973
LinkDB
All DBs
Position
Unknown
AA seq
3046 aa
AA seq
DB search
MDKFGSMHLCIFLIHATIFFRFTAYGACCTSSTRTELGNSNEKKWFNISDRPSMSKSGLA
PVRSRSFSQLSFSKSVYSFEVMEDTPPGTIVGHVEVVYSKENETSVYSVQEDDGDGLFLL
NPHSGEFLLSRALDFELERYYILTAAAQQGDSELSRVRVYFNVIDVNDNPPLFNQKAFSA
SVPEDSPVGICFLSLNVSDPDEGINGEVYLVVTSGNLESKFSINQQGALCLRGELDRETN
AMYSLIVQANDRALPTEARLTTSVDVTVYLLDVNDNSPLITTPSTIRFPENAPLHSVVTV
IQAIDADAGSNGEVVFIFESAEEEPFSINSSTGVVYLQKPLDRETEDVITVILKVKDKGV
PPLFSSLNLTVLIEDVNDHNPEFIQSSYSLSVYEDVPRGTSLLRINASDQDIGSNGQVRF
SVSESGFMVDSVLGVVSVIDKMDREKKPFYSFSVLAEDQGDVQRSATATINVTVLDVNDC
VPIFSSESLTLHVFENGEDTSQHTHQIYASDEDLGVNGQLTYSLESGNDESIFSLSSNGT
FQILEDLDREVKSHHMLKVIAVDSGFPSLTSTGTMVIVVDDVNDNVPVFDNDTFNTLISE
DSPVGMFFWRITASDLDEGTNGQLRYSLEGLDVPFSINETSGDLFTISSLDREAVALYRF
LVTATDGHPTKPLSSSAAVSVKVQDVNDNFPSFLYGPYVANVPAGITKGSVVGTVMAEDA
DAGLNAKLHFSLHGQQAHLFSINPSTGTVFTTDSVKRRNDITVDVHIQDGADMPKMDITT
LTVRFQNDSYFPGIAVQVYKYVLSEDAATGTLVATVTAETWRNISVSFYLASGNFGEVFE
LHDSTGELTVKDPLDFETNRHFHLIVEARDSGIPPFSSYAELHLNVSDVNDNPPVFSQSI
YRCDLYENLASSRVCNVFATDADSGVFAEVEYFILVGNIGGAFKIDKNRGSLSTTKHLDR
EKLPYYNLTLKAIDKENNSLSAIAAVIIVVLDTNDHAPRFSQIFITEVPEDAPVGFSVIQ
ITATDEDVGLNAVIEYTIIGHYSEFPFSIDKTTGTLLVLLPLDREDQDHYIVKVNANDSA
WSISTDITIDITDINDNTPIFYQPLYSVTVPEMKMQEVSLLQVCATDRDLGENAHILYFI
DPPNEYFLVNVSTGEISNKQPVVLRKSESVNFAFTVVASDCGSVPLNSSSIVSVTIVQYN
NFPPSFLPFRTLVPVPLTLVVGTEVIQISAVDQDSLEMNNNVEYFNSGGNGSLYFEVERN
SGKVLLNKTLANSLNIILTLQITVKDKGLPPLSAQTEISFEVTQENMFAPHFLNSKVEFF
VPEDLPIDSVIGKIQGKDKDFGINGVISYSFDGGNENGLFSIGHSSGLIMLVKALDFEES
ETHHLNVIAKDGGWHPKMGRLNITVYVTDLNDNPPVFTSRDYIATISENALIGTSVLQVW
AMDADTGIHSQITYSLIAGDIHLFYLDTKNGTITTSEIFDYEQNQHFELTVKATNIGFPY
LFTVAHIHIQVAGLNEFIPAFQRHLYNFSVSEALLPKTEIGRVMAIDYDLGPDGKVFYVL
AGQSKKASFVVDEHTGIIYICKDLKNRLQNKDILRVLAKNRGAITGFNVDEALIHLHILD
ENDPPVFDSMLYTVAVPEGISIGTSITKVKAVDQDVIPEWSRFSYRIEHGNINSSFIIDP
ASGVILVNSHLDREMWAIYNLTVIAINEGSPAVTGSTKVAITITDVNDNSPKLLNTEGFV
RENQPAGTLVSTLAATDDDLPPNQGPFTYWMMRPAEGFSLASDGVLLTSRPFDRERNPLF
HIHIVVQDAGKPPMSSTTLFNIKVLDENDNAPLQRNINILVKYYGSSFPGGLIGNVRPTD
QDELDVFNCTIRNGPLRMFSFPFGMCNLWSSPYQGEATYNISVEASDQLHPSVNNSIYVN
YKGFTNVSLDNCVLFYISISTLEEFLSLKYLKFVKALDSLFNLQASKTHVFGMKLQGDKM
LLLAAVKSYNGQYLTGEAASGISNMHKRLLEVQSNVTISQITSDPCMLRPCHNGATCNRN
IHISQEVAVLESSSLIFVSPYFVEIFNCSCPTGFTGDACELDFDECTKEPCENGGNCYNN
PGTYLCQCKEGFSGPHCNTVDNECQTVICLNGGTCWNRQGGFICDCSPGYEGRFCDRIVD
HCASSPCVFGNCFSFLTGYSCQCPFGVSGINCEEHSYGFQELSFIEFPPLDPQYNFIYLE
FATVQQNALLLYNHGDPSTSDFMALEIVSGRLWLSYDLGSGVIRLETGKIVADGSFHNIT
ARRTGNIASLEIDNCSANEPRGFCLSQNGGTGTQRTLEVSSNNMTFGGVKSIDVILQRQI
RTHDFVGCMRNVQVNNIGPDSLKSLASQNVLDRCPRANIPPCETAECLNEGVCQDRWSHH
HCQCRDHFTGPNCAMNLAEQHVLFLNGEAYIEFDVKESYRRNQLLQAILYGKEGDSQGFD
SVEIKMRTVRRNGVLLVCWCQTAHLKLKISDGKPLYVFTNVTSGQQLELSTEGDVSDGQW
HVLQLRRKGAYISLFVDERPVVNTTNGTITHSAFLVETIFLGTASLGESRGFPEMIQDLG
FRGCVEYIKFNGHLLSFSSYNEIVQASSSPSVFQTFCVSPNRCVLTPCLKDSCLSEPCWN
DSDCGSSSKEDYWCICLYNVSGSPCGSCSSDVVHSEACSQTQNSVPLWIVAIVLPIILIL
LILVLCIFLRRQGKLCEGEKRSHVYLMPPSKQHGTDNLAFSLGPADESHPNVSSGASKQP
DLIKPRDLMQGVESCTENGPSCHVSGFGGSELEYYEIDSTYSDLKNPELKKEDARGDQAN
GNPKFSQPQTNHDPSPKLHQKTSRGDFYQWQRQSHLFFKRKLAPDLTGPPQHLSVDEVER
LNTPRDQKGYPHHNFRECPIKPCRSGATETSSESESHCSFTGSEFDCERELSLVSSHDKD
EHPPEGKDTLAVSIMTPRKNGVDIAADWSRGQFILTAPSPFRDMVTSPSVHSLPNTSVSG
GIHQLENLLNLGVHFNTYADVFEDIASLPTIQPADCDFQSDQEEII
NT seq
9141 nt
NT seq
+upstream
nt +downstream
nt
atggacaagtttggatcaatgcatctctgtatatttctcattcacgcgacgattttcttc
aggtttactgcttatggtgcttgctgtaccagttcaacaaggacagagctgggtaatagt
aatgagaagaagtggttcaacatatcagatcggccatctatgagcaaatcaggcttagct
ccagttcgtagtagaagcttctcacagctatccttttccaaatctgtatattcctttgaa
gtgatggaagacacaccccctggaacaattgtgggacatgtggaggtggtatatagtaaa
gagaatgaaacctcagtgtactctgttcaggaggatgatggcgatggcctctttcttctc
aatccacattccggtgaattcctcctgtcccgtgctctggattttgagttggaacgctac
tacatcctgactgctgcagctcagcagggagacagtgagctcagtagggtcagggtgtac
ttcaatgtgatcgatgtcaatgacaacccaccattgttcaaccagaaagccttttctgcc
tctgtaccagaagactcacctgttggaatatgcttcctaagtctgaatgtttcagatcca
gatgagggtataaatggagaagtgtatttagtggtgacatctggaaatcttgagagtaag
ttctctataaaccagcagggagctctgtgtctgcgaggggagttagacagagagacaaac
gcaatgtatagtctcattgtccaggccaatgatcgtgctctacccacagaggctcgactc
acaacctcagtggatgttaccgtctatcttctggatgtcaatgacaactccccgctcatc
acaacacccagtacaattcgttttccagagaacgcacctcttcattctgttgttacggtc
atacaggccatagatgctgatgctggatccaatggtgaagttgttttcatttttgagagt
gcagaagaagaaccgttcagtataaatagttcaactggggttgtgtacctgcagaagcca
ttggacagggaaaccgaggatgttatcacagtcatattgaaagtcaaagacaaaggtgta
cctccgttgttcagttcattgaacctcacagtgctaattgaggatgtgaatgaccacaat
ccagagttcattcaaagctcttacagcctttcagtatatgaggatgtacctcgcggaaca
agcctgctcagaattaatgcaagtgatcaagacattgggtcgaatgggcaggtgcggttc
tctgtctcagagagtgggttcatggtagactctgttctaggcgttgtctcagtgatagac
aagatggaccgtgagaagaagcctttctatagtttttcagtcctagcagaagaccaggga
gatgttcaaaggtctgccactgcaaccatcaacgtcacagtcctagacgttaatgactgc
gtgcctattttttcatctgaatcacttacattacatgtcttcgaaaatggggaagacact
tctcagcacacccaccagatatatgcgtctgatgaggacttgggagttaacggtcagctg
acatattctttagaatcaggaaatgatgagagtatcttctcacttagttccaatggaacg
ttccaaatcttggaagatcttgatagggaagtgaaaagccatcacatgttgaaagttatt
gcggttgattcaggattcccatcactaacaagcacaggcaccatggttattgttgttgat
gatgtcaatgacaacgttccagtatttgacaatgacacgttcaatactctcatatcagag
gattctcctgttgggatgtttttttggagaattacagcttcagacttagatgaggggaca
aatggacaactaagatattctttagaaggcctagatgttcctttttccatcaatgaaaca
tctggagatttatttaccataagttccttggacagagaggcagtggctttgtacagattt
ttggtgactgctactgatggacatcccacgaagcctctttcaagctcagctgctgtttca
gtaaaagttcaggatgtgaatgataactttccgtcctttctttatggaccatatgtggcc
aatgttcctgctgggataaccaaaggatcagttgtcggcacagtgatggcagaggatgca
gacgctggattgaatgcaaaactacatttttctctacatggccaacaggcccatctcttc
tcaattaaccctagcacaggaaccgtgttcactacagattctgtgaagagaagaaatgac
atcacagttgatgttcatatacaggatggagcagatatgccaaaaatggacataacaacc
ttgactgtcagattccagaatgactcctactttcctggaattgcagtccaagtatataaa
tacgtcctctccgaggatgcagctactgggacccttgtggctactgtgactgcagaaaca
tggagaaacatatcagtgtctttctatctggcctctggaaactttggggaagtttttgag
cttcacgacagcactggcgaactgactgtcaaggatcccttagattttgaaaccaacagg
cattttcatctcatagttgaagccagggactcagggataccgccattttcatcatatgcc
gaacttcatttgaatgtcagtgacgtgaatgataatccaccggtgttctcgcaaagcatc
tacagatgtgacttgtatgagaacttggcttcaagtagggtgtgtaatgtgtttgcaacc
gatgcagactctggtgtgtttgcagaggtggagtacttcattttagtgggtaacatcgga
ggcgcatttaaaatagacaaaaatcgtggcagtctttccacaacaaagcatttagatcga
gaaaaattaccatattataatctcaccctcaaggccattgataaagaaaacaacagtctt
tcggccattgcagcagttatcattgtagttctcgacacaaatgatcatgcgccccgcttc
tcacagattttcatcacagaggttcctgaggacgcccctgttggcttttcagtcattcag
ataactgctacagatgaagatgttggtttaaatgctgtcattgaatatacaatcatcggc
cattatagtgagttcccattcagtattgataaaaccactgggactttactggtactgctt
cctttggacagagaagatcaggatcattacatagtgaaggttaatgccaacgattctgct
tggagcattagcacagacatcaccatagacattacagatatcaacgacaatacaccgatc
ttctatcaaccactttactctgtcactgtccctgagatgaagatgcaagaagtttcactt
ctacaagtttgtgctactgatagagatcttggtgagaatgcacatatcctctacttcatc
gaccctccaaatgaatattttttggtaaatgtatcaactggggaaatttcaaacaaacag
cccgttgttctccgtaaatctgaatctgtaaattttgcgtttacagttgtggcgtctgac
tgcggcagtgttcctttgaacagctctagcattgtttcagtgacaatagtacaatataat
aatttcccaccctcgtttttacccttcaggactttggtaccagtccccttaaccctggtt
gtgggaacagaagtgatccagatatctgcagtagatcaagattctcttgaaatgaataac
aatgttgagtactttaatagtggtggcaatggatctctttattttgaggtagaacgtaac
agcggaaaagtgctgttgaataaaactttagcaaacagccttaacatcatcctaacactt
caaatcactgtgaaagataaaggcctccctcctctttctgcacaaactgaaatcagtttt
gaagtcacacaagagaacatgttcgcaccacattttcttaacagcaaagttgagtttttt
gttccagaagatttgcccattgattcagttattggaaagatccaaggcaaagataaagat
tttggcatcaatggtgttatttcctattcttttgatggtgggaatgaaaatggattgttt
tccattggacactcgtcaggattgatcatgcttgttaaagctcttgactttgaggaatca
gaaactcaccatctaaacgtcattgccaaggatggaggctggcatcctaagatggggaga
ctcaatatcacagtatatgttacagatttaaatgataaccctcctgtatttacatctaga
gattacattgccactatttcagaaaatgctttaattggtacctcagttttgcaggtttgg
gcgatggacgctgacacaggaattcactctcaaatcacgtattcgcttattgcaggagac
atccatctcttctatttggacactaaaaatggcactatcaccacttcagagatatttgac
tatgagcaaaatcagcattttgaacttacagtcaaggccacaaacattggctttccatat
ttgtttactgttgcccatatacacatccaggtcgctggcctcaatgaattcatccctgct
tttcaaagacatctatacaacttctctgtgtcagaggctttgctgccaaaaactgaaata
ggaagggtcatggctatagactatgacctagggcctgatggaaaagtgttttatgtactt
gcagggcaaagtaaaaaagctagttttgtggtggacgagcatacaggaataatatatatc
tgcaaagatttgaaaaatcgccttcaaaataaagacatcctacgagtgttggcaaaaaac
agaggagccattactggatttaatgttgatgaggcattaatacatctacacatattagat
gaaaacgatccccctgtgtttgattcaatgctctacaccgtagcagtgccggagggcatc
tcgattgggacctccataactaaagtcaaagcggtggaccaggatgtgatcccagaatgg
agcaggttctcttatagaattgaacatggaaatatcaatagttccttcattatagatccc
gcaagtggcgtcattttagttaacagtcacttggatagagagatgtgggccatctataac
ctgacggtcattgctattaatgagggctcacctgctgtaaccggaagcacaaaggtagct
atcaccatcactgatgtcaatgacaattctcccaaattgttgaacacagaagggtttgta
cgagaaaaccaacctgctggcactcttgtctctactttagctgccacagatgatgatctt
cctccaaatcaaggtcctttcacatactggatgatgcgacctgctgaggggttttcgctt
gcatctgatggagttctccttacctcaagaccttttgatcgggagcgcaaccctcttttt
cacatacatattgtggttcaagatgctggtaagccgcctatgtcctccaccactttgttt
aatattaaagttcttgatgaaaatgacaatgcaccacttcagagaaacatcaatatattg
gtgaaatattatggaagttctttcccaggaggactaatcggaaatgtgagaccgaccgat
caggacgaactggatgtgttcaattgtacaatcagaaacgggccacttaggatgtttagt
ttcccattcgggatgtgtaatttgtggtcctccccataccaaggagaggcaacatataat
atttctgttgaagcgagtgaccagctccacccttcagtcaacaacagcatctacgtcaat
tacaaaggctttaccaacgtctctctggacaactgtgtgttgttctacatctctatatct
actcttgaggaatttctttctttgaagtatttaaaatttgtcaaagcattggatagcctc
tttaacctacaagcatccaaaacgcatgtatttggaatgaagttgcaaggagataaaatg
ctgcttttggctgcagtgaaaagctacaatggtcagtatctaactggagaggcagcaagc
ggaatatcaaacatgcataaaaggttactggaagtgcaaagcaatgtgactatatcccaa
ataaccagcgacccctgtatgctccgtccctgccataatggtgccacctgcaacagaaac
attcacatcagtcaggaagttgctgtgttggaaagctctagtcttatatttgtttctccc
tattttgtggagatctttaactgctcttgcccaacaggctttacaggtgatgcatgtgaa
ctagactttgatgaatgcaccaaggaaccttgtgaaaatgggggaaactgctataacaat
ccaggaacttatttatgtcaatgcaaagaggggttctcaggacctcactgcaatacagtt
gataatgaatgtcaaacggtaatatgtttaaatggaggaacgtgttggaacagacaggga
gggttcatatgtgattgcagcccagggtatgaaggaagattttgcgatcgtattgttgac
cactgtgcttcctctccttgtgtgtttggcaactgctttagttttttaactggttactct
tgccagtgtccatttggtgtgagtggaatcaattgtgaagaacacagttatggctttcag
gaactttcttttatagaatttcctccattggatccacaatataacttcatttatctggaa
tttgcaactgtgcagcaaaacgcgttgcttttgtacaaccatggtgacccatcaacttca
gacttcatggcccttgaaattgtgagtggaaggctgtggctgtcttatgatcttggatct
ggagtgataagattggaaacaggaaagatagtggctgatggaagttttcacaacatcacc
gcaagaagaactggaaatatagcctctctagaaatagacaactgctctgccaatgaaccg
cgagggttttgcttatcgcagaatggtggcactggaacccaaaggactctggaagtgagc
tcaaataacatgacgtttggtggcgtaaagtccattgatgtcattttgcaaaggcaaatc
aggactcacgactttgttggctgtatgagaaacgtgcaagtgaacaacattggtccagat
tccttaaaatctctggcatcccagaatgttcttgatcgatgtccgcgagcaaatattcct
ccctgtgaaaccgcagagtgtttgaatgaaggagtttgtcaagaccgatggtctcaccac
cactgccagtgtagagaccatttcacaggacccaactgtgccatgaatttggctgagcag
catgtattgtttctcaacggagaggcctacattgagtttgacgtcaaggaaagctacaga
agaaatcagcttctacaagccattctgtatgggaaggaaggagactctcaggggtttgac
agtgttgaaatcaagatgaggactgtcagaagaaatggcgttttgcttgtgtgctggtgt
caaacagcacatctaaaacttaagatatcagatggaaaacctctgtatgtgttcaccaat
gtcacatctggtcagcagctggagctctcaacggagggagatgtgtcagatgggcagtgg
catgttcttcagctacgcagaaagggtgcatacatatctctgtttgtggatgaacggcct
gttgtcaacaccaccaatggcaccataactcactctgctttcttagtggagaccattttt
ctgggcactgcttcactgggagaatccagaggtttcccagagatgatccaggacttaggt
tttagagggtgtgtggaatacatcaaattcaacggccatctcctatccttcagcagctat
aatgagatagtccaggccagctccagcccgtctgtcttccaaaccttctgcgtttctcca
aaccgctgtgttctgactccatgcctcaaggattcctgtctatctgagccctgctggaac
gatagtgactgtggatcttcttccaaagaagactactggtgcatttgtctgtacaacgtg
tccgggtctccgtgtggatcctgttcatctgatgtcgtccacagcgaggcctgttctcaa
acacaaaacagcgtccccttatggatagtggccatcgttcttcccatcatcctcattctg
ctgattctggttctatgtattttcctcaggagacaaggaaaactttgtgagggtgaaaag
aggagtcatgtctacctcatgccaccaagcaaacagcacggaacagataacctggcattt
agtttaggtcctgctgatgagtctcatccgaacgtctcaagtggggccagcaagcaaccg
gatttgataaaaccaagggatttgatgcaaggagtggaaagttgtactgaaaatgggcct
tcttgtcatgtctcaggttttggagggagtgaactggagtactacgagattgatagcaca
tactcagatttgaagaacccagagctgaagaaggaggatgcacgtggagatcaggcgaat
ggcaatccgaaattttctcaacctcaaactaatcatgatccatctcctaaacttcatcag
aaaacatctagaggtgatttttaccagtggcaacgtcagtcccacctgttcttcaagaga
aaactggctcctgatctgacaggccctccacagcatctctcagtagatgaggttgagagg
ctgaacaccccacgggaccagaagggataccctcatcacaatttcagagagtgtcccata
aagccatgcagaagcggggcgacagagacgtcgtcagagagtgaaagtcactgctccttc
accggctcagagtttgactgtgagcgagaactgtcccttgtcagctcacatgacaaagat
gaacatccacctgaaggcaaggacacactggcagtttcgattatgacacctcgtaaaaat
ggggtggatattgctgcagattggtccagaggacagtttatactaacggccccttcaccc
ttcagagacatggttacatccccctccgtccacagtctccccaacacctctgtctctggc
gggatccatcagttagagaatctcctaaatctaggtgttcactttaacacctatgcagat
gtgttcgaggacatagccagcttaccgactattcagccagctgattgtgattttcaaagt
gatcaagaggaaatcatttga
DBGET
integrated database retrieval system
