Rhinichthys klamathensis goyatoka (western speckled dace): 130105818
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Entry
130105818 CDS
T09701
Symbol
frem2b
Name
(RefSeq) FRAS1-related extracellular matrix protein 2b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130105818 (frem2b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
rkg04091
]
130105818 (frem2b)
Lectins [BR:
rkg04091
]
C-Type lectins
Lecticans
130105818 (frem2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
TMEM154
Syndecan
Motif
Other DBs
NCBI-GeneID:
130105818
NCBI-ProteinID:
XP_056127985
LinkDB
All DBs
Position
Unknown
AA seq
3112 aa
AA seq
DB search
MAWSITEQRQRRACHVHLFLFILTLIRHASTQGFESLGLTYGLRSELSEDAILVANNGIR
VPFGRSVYIDPINDLVIQVQPGDKCTITVLDNDPLSQRPGQLSPKKFPCEFGPNDVKYSH
FGSRSPSKDRVRLQLRYDTQTDTVIIPFMMEVEVIFTQLEILTKHMPVVVEKLLGMSNPI
DKKILEFTYDRNAHLCKVTSLASGSSLPRYGKLVDNGKLGKPVNCDEFVRMDIRYQHTFA
HRSPNRDYIPMYLELQDKEVNVLKQEFFQIVVLIKEGEENTAPKPSFVAMMMMEVDQFVM
TAITHDMLAAEDVESNPDDLIFNITSPLSFEEGYIVSTDDRNLPITSFYQADLKDFKIAY
KPPSVDSDAERIFQIEFEVVDTEGAISDPFAFMIVIKPMNTLAPVVTRNTGQLLYEGQSR
PLSSSQNLQISDEDNLDHVQITVINGLRHGELTVLGSRRKFFTPADLDVGSVIYQHDGSD
TYSDNIIFRMTDGKNEVEFLFPITVVPTDDEPPIINANTGLVLFKNQMMPISPLMLSAAD
IDSEDSTIKFIIVPPSSNIGEVMLRQSDAPEDPSTWRFNAEEEMYEKVVTEWFQYDITEG
KLFYRHVGPHNTKTIMDQFVFRVQDDNDPPNQSGENSFIIKVLPIDDIPPELYPGTTLQV
TVHEYQLTHFRKKFLRYTDLDSEDRDLKYTITQPPTDTDENSPGILGSIVLTESPNSEVT
EFTQAQLNHHKIAYKPPDLELGITPHVVQFHYKVEDMSGNSANGIFTIFLQPVDNKPPQI
TNTGFTLQERGVHVITRAELDTTDADTDSSQILFTITQPPKHGQVKYTFTEMTKGKSFNL
VDISNGRISYIHNGDESTSDFFQLDVSDGVHVVTITVRINVKPIDDEAPTISLPEGTIGS
YIDVLENGATEITTNVIQGRDEDTDDLRLTFIVEEPPVFGEILVNGVPSNRFTQADIISG
LVVYTHSTGEIGLTTKLDFFNLTLTDMSDEWTVGGNKIKGVRVQVTILPLDSQAPEVFVG
PRFIVVEGEKNVIEISHISANDIDTPNDDLLCTIIVQPTSGYVENISPAPGSEKSRSGIA
ISAFTIKDIRENHIYYVQSIHKGVEPVEDRFTFRCSDGINFSERHFFPIVIIPSNDEKPE
IHMREFVVMEGMNIVIDTPILNGADADVPAGELTFIISKPPKHGYILNQLTSGTLPVTNF
TLDQIREASSIFYEHDDSENTEDSFEVLLTDGKFTVEKTVMIMVILVDDETPRMVINDGL
EIEIGEVKIINNKVLKATDLDTEDSILTYIIRYGPNQGFLQKRTPFGTLENITVGMNFTQ
TEVDQDMIMYIHNGQEGVRDLIKFDITDGINPLIDRYFYVTVGGIDMVFPDVINKGVSLK
EGGRVTLTTDLLSTSDHNSPDEHLVFTITRAPIRGHLECTDVPGMPISLFTQLQLAGNKI
YYIHTADDEVKMDSFEFEVTDGYNPVFRTFRVSITDVDNKKPVVTIHGLVVNEGENKLIT
PFELTVEDRDTADQLLKFTITQVPVHGKLLFNNTRPVTFFTKQDLNENMIRYKHDGTESS
SDSFSFTVTDGTHTDFYVFPDTVYATRKPQMMKITIFSVDNGVPQVVTNKGGTTIRILPT
GHLGFLITSKTLKAEDRDSPQGAVTFKITVGAEHGYLINLGKGNATITTFTQADIDDMHI
CYVLRDGDNATSDAFHFSIEDNGGNKLKNQHFRLNWAWISLEKEYYQVDEEAKFLEVVLR
RRGYLGETSFVSIGTKDGTAEKDKDFRGKAQKQVQFNPGQTTATWKVRILSDSLYEQSET
FQIVLSEPVMGALEFPEAATVEIVDPGDECTVFIPLATYSIEEDIGELLIPVRRSGDVSQ
ELMVVCFTQQGTAKGTVPTTVLSYSDYISRPEEHHSVLRFDKGETERHCRVVVIDDSLYE
AEESFNVTLSMPMGGRLGQEFPTTRVTILPDADDAPVFYFGEMEYHVDESDGYVEVRVWR
TGSDISKTGTVTVRSRKTDPVSAEAGVDYVGISKNLDFSPGVNMQTFKVTILDDLGQPVL
EGPEKFELVLRMPMNGILGEPGKATIYVNDSISDLPKVQFRDPTYTCNENDGQISVIVYR
SGDLSYKSSVRCYSRQGTAQVMMDFNERPNTDVSTIVFLPGEVEKPCVLILVDGTEHEED
EELRLVLGSPKSESPFGASIGVQNETLIKIKDDADKAIIRFGATKFSVSEPSESGQISVV
RIPVHRTGDTSKVSVVRVHTKDGSASSGEDYHPISEDVEFKEGETEHILEVEILYDGVRE
MREAFTVHLKPDENMVAEIQVTKAIIYIEEANSMADVTFPSVPVVVSLLQYDDTSRTRDT
QPVAGYPVLCVTSCNSKYPDFDRTGSICVSEHINNTLTRYRWLVSAPTGPDGVTSPMKEV
DFDTFFTSSKTITLDSVYFQAGSRVQCAARAVNSNGDEGLELTSPIVSISQEDGMCQPRV
VGTVGAEPFSARLRYTGAEDPDHPNLIKLTVTMPHIDGMLPVVSTRPLSNFELTLSPDGT
RVGNHRCSNLLDFTEVRTRYGFISDATRNPDAIGGTAPYQFSTTLRGQNTLRFYRNLHLE
ACLWEFVSYYDMSELLNDCGGNIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGAGGWQH
FDLQSELRLTFVYDTAILWRDGIGSPPEAELQGALYPTSMRINEQGRLVVNFRTEARFRG
LFVTAHSASLMTSMVMCADHPGLTFNLSLVRSEPTYNQPMQQWTFISDFAVRDYSGTYTV
KLIPCTAPPSVEYSFRPVCHPREPITFDLDIRFQQVSDPVPAEFSLNTQMLLLSKRTLWL
SDGSMGFGQESDTAFSEGDVIYGRVMVDPVQNLGDSFICNIEKVFLCTGADGYIPKYSPD
NFEYGCLADSPSLLYRFKIIDKAQPETQARTFGSISFNAFLAVDDPQALVLVRQPGSDGF
RMDSTALFQVSAGREWYIHTIYTVRSRDNANRGIGKRSLDYNSVTHRHSISKRSASSVPN
LAQDIGAENNRGTNILHITLDRSTQKQPNLHKESQAEGVVPRELNHRDSSDDQLVLIIGI
LVGLLFTILLVVLVALVVRSRREKNVTEPPKSSNSTEPMMTQVLDSNNSSEV
NT seq
9339 nt
NT seq
+upstream
nt +downstream
nt
atggcttggagtataacagagcagcggcaacgtagagcgtgtcatgtgcacttgtttctc
tttatattgactttgattcgccatgcatctacacagggatttgagagtttgggattaacc
tacggtttaagatctgaactttcagaggatgctattcttgttgccaataatggaatacgg
gttcccttcggcagatctgtttatattgatccaatcaatgatctggttatccaagttcag
cccggagacaagtgcaccataacagttctggataatgacccactgtcacagagaccggga
cagctgtccccgaaaaagtttccttgtgaatttggtcccaatgatgtaaagtactcgcat
ttcggatccaggagcccctcaaaagacagagtaagacttcagctcagatatgatactcag
actgatacagtcatcattccctttatgatggaagtggaggtgattttcactcagcttgag
attctcaccaaacacatgcctgtagttgtagagaaactgcttggaatgagtaatcctatt
gataagaaaatcctggagtttacttatgatagaaatgctcatttgtgtaaagttacatct
ctggccagtggcagctcattacccaggtatggaaagctggttgataatggaaaattaggc
aaaccagtgaactgtgatgaatttgtcagaatggacattcgctatcagcacacttttgca
catcgttctccaaaccgagattatattcccatgtatttagagttacaagacaaagaagtt
aatgtactgaaacaagagtttttccaaattgtggtgcttataaaagagggtgaggaaaac
acagctcctaaaccgagttttgtagcaatgatgatgatggaagtcgaccagttcgtaatg
acagctataacccacgacatgcttgccgctgaggatgtggaatctaatcctgatgattta
atctttaacatcacttctccgctgtcctttgaggagggctacattgtaagcacagatgac
aggaatttgcccatcacgtctttttatcaagcagacctgaaagattttaaaatagcctac
aagcctccctctgttgattcagatgcagagagaattttccaaattgaatttgaagttgta
gacactgagggggctatatcagacccttttgcgttcatgatagtgattaagcccatgaac
actctagccccggttgtgacccgtaacactggacaactgctttatgagggtcagtccagg
ccactgtccagctcacaaaacctacaaattagcgatgaggacaatttagaccacgtccaa
atcaccgttattaatgggctccgccacggagagctcacagttctggggtccaggcgaaaa
tttttcaccccagcagatcttgatgtaggtagcgtcatctaccagcatgatggcagcgat
acgtacagcgataatatcattttcagaatgacagatggcaaaaatgaagttgagtttcta
tttcccattacagtggtgccaactgatgacgaacctcccataatcaatgccaacacaggt
ttagttttgtttaaaaaccaaatgatgcccatttctcctttaatgcttagtgcggcagat
atagactctgaggattcaactatcaaattcatcattgtgcctccctcctctaatatcgga
gaagtgatgcttcgtcaatcagatgcaccagaggatccatccacttggaggttcaatgct
gaggaagagatgtatgagaaagtagtgaccgagtggttccagtatgacatcacagaagga
aagctcttttacaggcatgtcggaccacataatacaaaaaccatcatggaccagtttgtt
ttccgtgtgcaagatgacaatgacccaccgaaccaatcaggtgagaactctttcatcatc
aaagttctccccattgatgatatccccccagagttgtaccctgggaccaccctgcaagtg
accgtccacgagtaccagctcacccattttcgaaagaaattcttgcgctacacagacttg
gactcagaagacagggacctgaagtacacaattacccagccacccactgacacagatgag
aacagccctggcattctgggaagcatcgttctaactgagagtccaaactcagaggtcacc
gagttcactcaggcacagctaaaccatcacaagatagcctacaagcctcctgatctagag
ctcggaataactccacatgtggtgcagttccattacaaagtcgaggacatgtcgggaaac
agtgccaatggaattttcactatatttttacagcctgttgacaacaaacctccccagatc
accaacacaggctttaccctgcaagaacgaggggtgcatgtcatcacacgtgctgagctg
gacaccacagatgcagacacggacagctcacagattctgtttacaatcacccagcctcca
aagcacggtcaggttaagtacacgttcactgaaatgactaaagggaaatcattcaatttg
gttgatatatctaatggtagaatatcttacatacataatggggatgagtcaaccagtgat
ttcttccagcttgatgtcagcgacggtgtccacgttgtcacaatcacagtcaggatcaat
gtgaagcctattgatgatgaagcaccaaccatcagtcttccagagggcactattggttct
tacatagatgttttggagaacggagcgactgagatcaccaccaatgtcattcagggtcga
gacgaggacactgatgacctcaggttgacctttatcgtggaggaacccccagtgtttggt
gaaatattagtgaatggtgtgccgtccaataggttcactcaagcagacatcattagtgga
ttggtagtgtatacacatagtactggagaaattggcttgacaacaaaactcgacttcttt
aatttgacgctcactgatatgtctgatgaatggacagttgggggaaataaaatcaaaggg
gttcgtgtgcaggtcaccattctgccgttggatagtcaggcccctgaggtcttcgtgggc
ccccgattcattgtcgtggagggtgagaaaaatgttattgaaatttcgcatattagtgct
aatgacattgacacccctaatgatgacctcctttgcacaattattgtgcagcccacctca
ggatacgtagaaaacatctcccctgcaccaggctctgagaaatccagatcagggattgca
attagtgctttcaccatcaaagacattcgggaaaaccacatttattatgtgcaaagtatt
cataaaggcgtcgagccagttgaggacaggtttactttcaggtgttcggatgggataaat
ttttcagagagacacttttttccaatcgtgataatcccatccaatgacgaaaagccagag
atccatatgagagagtttgttgtgatggaaggcatgaacattgtgattgacactccaata
ttaaatggcgctgatgctgatgttccagcgggtgagctcacgtttattatttcgaaacct
ccgaaacatggatatatcctcaatcagttaacctcaggcactcttcctgtcacaaatttc
actcttgatcagatacgagaggcttcaagtattttctacgagcatgatgattcagaaaac
acagaggatagttttgaagttcttcttactgatggcaaattcacagtggagaaaaccgtc
atgattatggtcattttggttgacgatgaaacgccaaggatggtgattaatgatggcctt
gaaatagagataggagaggtgaaaataatcaacaataaagttttaaaagcaactgatctg
gatacagaagacagcattctgacctacatcatccgttatggtccaaatcaagggttttta
caaaagcgaacaccatttggaacacttgaaaacataaccgttggaatgaatttcacacaa
accgaggttgaccaagatatgatcatgtacattcacaacggacaagagggagttcgtgac
cttatcaaatttgatattactgatggcattaaccccttgattgacaggtacttctatgta
actgtgggtggaatagacatggtgttccctgatgtgatcaacaaaggtgtttctctgaaa
gaaggaggaagggtgactctaaccacagacctgctcagcaccagtgatcataacagccct
gatgagcatttggtgttcaccatcactcgtgcccctatacgaggacacttagagtgcact
gatgtaccagggatgcccattagtttgttcacccagcttcaactagctgggaataaaata
tactacatccacactgctgatgacgaggtgaagatggacagcttcgagtttgaggtgact
gatggttacaaccctgtgttccgcacctttcgtgtgtccattacggatgttgacaacaaa
aagcccgtggtcaccattcacggactggttgttaatgaaggcgaaaataagttaatcact
ccttttgagctgacggtggaggaccgtgatacagccgaccagcttttaaagttcacaatc
acccaggtgcctgttcatggcaagttgctgtttaacaacacccgacctgtcactttcttc
accaagcaggacctaaatgaaaacatgatccgctacaagcacgatggaaccgagtcttct
tctgacagcttctcatttacggtcacagacggaactcacacagacttttacgtgttccct
gacactgtttatgcaactcgcaaaccccaaatgatgaaaatcacaattttttcggtggac
aacggagttccacaggttgtaactaataagggtggcacaacaataagaattctccctact
ggtcaccttgggttcctaatcactagtaaaacattaaaggcagaggatagagacagccct
caaggagcagtgacttttaaaattactgttggtgctgaacatggctatctcattaacttg
ggaaaaggcaatgcaactatcaccacatttacccaagctgacattgatgacatgcatata
tgctacgtgcttcgagatggagacaatgccacaagcgacgcattccacttttccattgaa
gacaatgggggcaacaagctgaagaaccaacatttccggcttaattgggcatggatatcc
ttggagaaagagtactaccaggttgatgaagaggctaagtttctggaggtggtcttgaga
cgtagaggttaccttggcgagacctcatttgttagtatcggcaccaaagatggtacggct
gaaaaggacaaagattttcgaggaaaagcccagaaacaagtccagtttaacccaggtcag
accactgctacttggaaggtgcgcatcttgtcggacagcctgtacgagcagtccgagacc
ttccagattgtcctgtcagagcctgtcatgggagcactggagttcccagaggcagcaacg
gtggaaatcgttgaccccggagatgaatgcacagtgttcatccccttggctacatactcg
attgaggaagatatcggagaacttctgattcctgtgcgaagatctggagatgtcagtcaa
gagctcatggtggtttgcttcacacaacaaggtacggccaagggcacagttcccaccaca
gtgctttcctactctgactacatttcccggcctgaggaacaccacagtgtgctgcgtttc
gataagggcgagacagagaggcactgccgtgtggtcgtcatcgatgactccctctacgag
gcagaggaaagctttaatgtcaccctaagcatgcccatgggcggccgtctgggtcaggag
ttccccaccaccagagtgaccatcctgcccgatgcagatgatgcaccagtattttatttc
ggagaaatggagtaccacgtagatgagagtgacggttatgtcgaagtccgggtttggaga
acaggaagtgatatttccaaaaccggaacagtcacagtgcggtctcgaaagactgaccct
gtttcagccgaagctggtgtggactatgttgggattagtaagaacctggacttttccccg
ggcgtcaacatgcagacgttcaaggttacgatcctggatgacctgggacagccggtgcta
gaggggccagagaagtttgagctggttctccgtatgcccatgaacggcattttgggagaa
cctggaaaagctacaatctacgtcaacgactccatctcagatttgcccaaagtgcaattc
cgagatcctacgtacacgtgtaatgagaatgatggacagatttctgttattgtgtaccgg
agcggagatctgagctacaagtcaagcgtgcgatgctacagccgtcaaggcacagcccaa
gtcatgatggatttcaatgagaggccaaacacagacgtctccaccattgtctttttacca
ggtgaggtggaaaagccttgtgtcctcatcctcgtggatggcactgaacatgaggaagat
gaggagctgagattggtgctgggaagtcccaagagtgagtctccgtttggggcctccata
ggggttcagaatgagacgctcatcaagataaaggatgatgctgacaaggccattatcagg
tttggagcaaccaagttcagtgtcagtgaacccagtgagtcagggcaaatctcagtggtg
aggatcccggtccataggacaggagacacatccaaagtgtcagtggttcgggtccacaca
aaggacggctcagcttcctctggagaagattaccatcccatctctgaagatgtggagttt
aaagagggagagacagagcacatcttagaggtggaaatcctgtatgatggtgtgcgagag
atgagagaggccttcacggtccacctcaaacctgatgagaacatggtagcagaaattcag
gtcaccaaagccatcatctacattgaagaggcgaacagtatggctgatgtgaccttcccc
tctgtgccagtggtggtttctctgttgcagtatgatgatacaagcaggacgagagatact
cagccagtcgcaggatatcccgtactctgtgtcacgtcatgcaactccaagtatcctgat
tttgaccggacgggctccatctgtgtttcggagcacatcaataacaccctgacccggtac
cgctggctggtcagtgcccctacaggacctgacggtgtgaccagccccatgaaggaggtg
gattttgacaccttcttcacctcctccaaaacaatcacattagactcagtgtatttccag
gcaggctcgcgtgtgcagtgtgcagcccgggctgtcaactcaaatggggatgaaggcctg
gagctcaccagccccatagtttccatcagccaggaagatggtatgtgccagccgcgggtt
gttggcacagttggagctgaacctttctctgccagactgcgctacactggagcagaagat
ccagaccatccaaacctcattaaactgactgttaccatgccccatattgatggtatgtta
cctgttgtctccactcggccgctctccaactttgaactgaccctgagtccagacggcacg
cgtgttggaaaccatcgctgctcaaacctgctggacttcacagaggtgcggacacgctac
ggtttcatctccgacgccacccgcaatccagatgccattggcgggactgcgccctaccag
tttagcacgaccctcaggggacaaaataccctacgattctaccgaaacctgcatctggag
gcatgcttgtgggagtttgtcagctactatgacatgtctgaactactcaacgattgtgga
gggaacatcgggactgatggacaggtgctgaacctggtgcagtcttatgtgaccctgcgt
gtgcccctgcacgtgtcatacgtgttccattcacccgttggcgctggtggttggcagcac
tttgacctgcagtcggagctgcgtctcacttttgtttatgatactgccatcttgtggaga
gatggcattggtagtccaccagaggctgaattacaaggggccctctatcctacaagcatg
cgcataaatgaacaaggtcgcttggttgtcaacttccgtacagaagcacgttttcggggg
ctctttgttactgcacattcagcctccctcatgacttccatggtcatgtgtgcggaccac
cctgggctgacctttaaccttagcttggtgagaagtgagccaacatacaaccagccaatg
cagcaatggaccttcatctctgattttgctgtgagggattactcaggcacttacacagtg
aaactgattccctgcacggctcctcccagtgtcgagtatagcttccgtcctgtgtgccat
cccagagagccaattacctttgatctggacatacgcttccaacaggtgagtgatccagtg
ccagcagagttcagtcttaacacacagatgctcctactttcaaagaggactctctggttg
tcagacggctccatgggctttggtcaggagagtgatactgctttctcagagggagatgtc
atctacggccgtgtaatggtagatcctgttcagaatcttggagactcgttcatctgtaac
atcgagaaggtgttcctttgcacaggggcggatggatacatcccaaagtacagccctgac
aactttgagtacggctgcttagctgattcaccatctcttttgtaccgattcaagatcatt
gacaaagctcagccagagactcaggcgagaacatttggtagcattagtttcaatgctttc
ctcgcagtagacgatccgcaagctctggtgctggtaaggcagccaggctctgatggcttt
aggatggattccacagctttgtttcaggtgtcggcaggcagggagtggtacattcacacc
atctacaccgtccggtccagagacaacgcaaaccggggcattgggaaaaggagccttgac
tataattctgtgacacacagacattcaatttccaaaaggtcagccagcagcgttccaaat
ttggctcaggatattggtgcagaaaataatcgtggcacaaacatcttgcatataacgctg
gaccgcagcactcaaaaacaacccaaccttcacaaggaatcccaagcggagggtgtcgtt
cccagagaactgaatcacagggactctagtgacgaccagcttgtcttgatcataggaatc
ttggtaggtctcctcttcaccatcctccttgtcgttctcgtcgctctggtggtgcgatct
aggcgggagaagaacgtcacggagccccccaaaagctccaacagcacagagcccatgatg
acgcaagtcctcgatagcaacaacagttcagaggtttga
DBGET
integrated database retrieval system
