Rhinichthys klamathensis goyatoka (western speckled dace): 130106241
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Entry
130106241 CDS
T09701
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130106241 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130106241 (ddx42)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130106241 (ddx42)
Spliceosome [BR:
rkg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130106241 (ddx42)
Complex B
130106241 (ddx42)
Complex C
U2 SnRNP specific factors
130106241 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
130106241
NCBI-ProteinID:
XP_056128234
LinkDB
All DBs
Position
Unknown
AA seq
899 aa
AA seq
DB search
MMNWNKGGPSGKRGFGFGGFSLASGKKEEPPVTQKAHSAFGSSGPSGGYGKNQQLSSFYK
IGTKRANFDEENAYFEDDEEESSSADLPYIPAENSPTRKQFQSGGGGGGSDSEDDPLDAF
MAEVEDQAAKDMKKLEEKEKEKKLAKGIRDDIEEEDDQEAYFRYMAENPTAGLTLEEEEE
EVDYDSDGNPIAPTTKKIILPLPPIDHSEIDYPPFEKNFYIEHEELSSLTGLGVVELRQK
LNLKVSGAAPPKPSTSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGVPISLSGRDMIGIAK
TGSGKTAAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHSECKRFGKVYGLRSV
AVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFE
YQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIVEVL
QTGKEKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLNQEGYSLGLLHGDMDQSERN
KVIADFKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVA
YTLLTTKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGL
GYRERPGLGSESTVSLERSSSGAALGNYEAYKPSTGAMGDRMSALKQAFHAQYKNHFVAA
SGVPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPDRPHLSYSPSSFSSVSSMLPLPALSS
GTKMSGFSSAGSLSSVSDSYSSSSSKEGSRSDRNADDRGRHGESHYRHGDRHSGGDRDRY
GERDRYSDRDRHGDSRNGEGSHRDREGRSERDGGERSGTHKDSFAVPDPPKRKKSRWDN
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactggaacaagggaggcccgagtggcaagcgaggctttggattcgggggattc
tctcttgctagtgggaagaaagaggaacctcctgttacccagaaggcccactccgcattt
ggaagttcaggaccatcaggtggatatggcaagaatcagcagctttcgtctttttacaaa
ataggaacaaaacgagccaatttcgacgaggagaatgcttattttgaggatgatgaagag
gagtctagcagtgcagatctgccatatatacctgccgagaactctcccactagaaagcag
ttccaatctggaggtggaggaggaggctcagacagtgaggatgacccccttgatgccttt
atggctgaggtggaggaccaagcagcaaaggacatgaagaaacttgaggaaaaggaaaaa
gagaaaaagttggccaagggtatacgggatgacattgaagaagaagatgaccaagaagca
tatttccgttacatggcggagaatccaacagctgggttgaccctagaggaagaggaggaa
gaagtggactatgacagcgatgggaatcccattgctcctactaccaaaaagattatattg
cccttgccccccatagaccactcagagattgactatcctccctttgagaagaacttttat
attgagcatgaggaactcagcagtctgactgggcttggagtggtggaactgagacagaaa
ctgaacctgaaggtttcaggtgcagcccctcctaaaccatccaccagttttgcccacttt
ggatttgatgagcagcttttgcaccagatccgtaaatccgagtacactcaacccacaccc
atccagtgccagggtgttcctatatctttgagtggcagagacatgattggcattgccaaa
accggcagcggaaagactgcagcttttatttggccaatgctggtgcacatcatggaccag
aaggagctggagccgggagaaggacctattgctgtgattgtctgccccactagagagctc
tgtcaacagatccattccgaatgcaagcgattcggtaaggtatatggccttcgctcagtg
gcagtgtacggaggtggcagcatgtgggaacaagccaaagctctacaggaaggagctgaa
attgttgtctgcaccccaggtcgtctaatcgatcatgtgaagaagaaagctacatctctg
cagcgtgtgacctacctggtatttgatgaagctgatcgcatgtttgatatgggctttgaa
tatcaagtgagatccattgccagccatgtcagacctgatcgacagactctgttattcagt
gcaacttttcggaagaaaatcgaaaagctggcacgagatattttggtcgaccccatccgt
gttgtgcagggagatataggagaggctaatgaagatgtcactcagatagtggaggtgctg
cagactgggaaggagaagtggggttggctgacgcgcaggctggtggagttcacctccgct
ggttcagtgctggtctttgtcactaaaaaggctaactgtgaggagctggctacaaatttg
aatcaggaaggttatagcctggggctgctccatggagacatggatcagagtgagaggaac
aaagtcattgctgactttaagaagaagaatctgcccatattggtagctactgatgttgct
gctcgtgggttggatattccatctatccgtacagttgtgaactatgatgttgcacgagac
attgacacacacacacatcgaattggtagaacaggtcgtgcaggagagaaaggtgttgct
tacactctgctcaccactaaagacacttcattcgctggtgacctggttcgcaatttagag
ggagccaatcagagtgtttcaaaggagctgatggacctggcaatgcagaatccctggttc
cggaaatcccgctttaagggagggaaagggaagaaactaaatattggaggtggaggcctg
ggttacagagagagacctggccttggatctgaatccactgttagtttggagcgcagtagt
agtggtgctgctcttggtaactatgaggcctacaaaccctccactggagccatgggagac
cgtatgtctgccctgaagcaagcatttcacgctcagtataaaaaccactttgtggcggca
tctggtgttcctcctaaacttactacaaagtccagcagctcctctggttggaccagtgca
ggaagtctaagttcgttgccttcaggagcacctgaggggcctgacagacctcacctgtcc
tactctccatcgtcgttctcctcagtttcctctatgctgccgctccctgccctcagctca
ggcaccaaaatgagcggcttcagtagcgctggctccctgagctcggtttcagactcttac
tctagctcttcttcaaaagaggggtcccgtagtgataggaatgctgatgacaggggtcgt
catggagaaagtcattatcgtcatggtgacaggcatagtgggggagaccgtgatcgctat
ggggaaagggaccgctatagtgacagagatcgtcatggcgatagccgaaacggtgaaggg
agccatagggacagagagggacggtcagaacgagatgggggtgagaggtcagggactcat
aaagacagctttgcagttcctgatccccccaaacgcaagaaaagcagatgggacaattaa
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