Rhinichthys klamathensis goyatoka (western speckled dace): 130106322
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Entry
130106322 CDS
T09701
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130106322 (ddx39ab)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130106322 (ddx39ab)
Spliceosome [BR:
rkg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130106322 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130106322
NCBI-ProteinID:
XP_056128370
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MAENDVENELLDYEEDEEPQGAPESVAPVGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVEGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKVAVFFGGMSIKKDEDVLKKSCPHIVVGTPGRILALVR
NKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatgatgttgaaaacgagctgctggattacgaagaggacgaggagccgcaa
ggagccccagagagcgtcgctccggtgggcaagaaggaggtgaagggctcgtacgtctcc
atccacagctcgggcttcagggactttctgctcaagccggagctgctgagggccatcgtg
gactgcgggttcgagcatccgtctgaagtgcagcacgagtgcatcccgcaggccatcctc
ggcatggatatcttgtgtcaggccaagtccggtatgggcaagacggcagtgtttgtgctc
gccaccctacagcagatcgagccggtggaaggacaggtgtcggtgctggtcatgtgtcac
acgcgtgagctggcctttcagatcagcaaggagtacgagcgcttctccaagtacatgccc
acggtcaaggtggccgtgttcttcggcggcatgtccatcaagaaggacgaggacgtcctg
aagaagagctgccctcacatcgtggtcgggacgccgggccgaatcctcgcgctggtgcgc
aacaaaaccctcaacctgaagaacgtcaagcactttgtcctggacgagtgtgacaagatg
ctggagcagctcgatatgaggcgtgacgtacaggacatcttcagactgacgcctcatgag
aagcagtgcatgatgttcagcgccaccctcagcaaagagatccgccccgtctgccgcaag
ttcatgcaggacccgatggaggtgtttgtggacgacgagacgaaactgacgcttcacggt
ctgcagcagtactactgcaaactgaaggacagcgagaagaaccgcaagctcttcgacctg
ctcgacgtcctggagttcaaccaggtggtgatcttcgtgaagtctgttcagcgctgtgtg
gctctttcacagttactggtggagcagaacttccccgccatcgccatccacagaggaatg
gctcaggaagagaggttgtctcggtatcagcagttcaaagacttccagcggaggatccta
gtggccacgaatctgttcggtcgaggaatggatatcgagagagtcaacatcgtcttcaac
tacgacatgccagaggactccgacacgtacctccacagggtggctcgtgccggccgcttc
ggcaccaagggtttggccgtcacgttcgtgtcagatgaaaccgatgccaaaatcctgaac
gacgtgcaggaccgatttgaggtcaacgtggccgagttacccgaggagatcgacatttcc
acttacattgaacagtccagatga
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