Rhinichthys klamathensis goyatoka (western speckled dace): 130106435
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Entry
130106435 CDS
T09701
Name
(RefSeq) neogenin isoform X1
KO
K06766
neogenin
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04350
TGF-beta signaling pathway
rkg04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130106435
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130106435
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130106435
Cell adhesion molecules [BR:
rkg04515
]
Immunoglobulin superfamily
DCC/UNC5 family
130106435
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
V-set
Interfer-bind
C2-set_2
fn3_2
NDNF
Sp38
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
130106435
NCBI-ProteinID:
XP_056128526
LinkDB
All DBs
Position
Unknown
AA seq
1427 aa
AA seq
DB search
MAERGARLLVFFTSLIVLRFGGADKGSAIRGFTPFRFSVEPVDTLAVRGLPAVLNCSAAS
GAPVRVEWKKDGTFLNLVADDRKRQLADGSLLISTVVHNKHNKPDEGVYQCVATIDNLGT
ISSRTARLTVAGLPRFLSQPEGVSVRMGGSEMLSCEVTEELVPFTRWERDGRPVELDARV
IQLPSGALVISNASQTDAGLYRCTIDALGPPKTTEEAELQVSADSGVEEKLETLQGPVAV
AKVVGESVLLPCVMKGYPVPVIRWTFNDRSIDEGHERFAVIGGGSLQIVNLTEEDAGIYV
CQTDSGNMTSEIQAELTVHVPPRFVTRPSNTYAQESMDIIFECDITGSPPPTVRWMKDGD
TVIPSDYFRIVKQHNLQVLGLVKSDEGFYQCLAENDAGNVQASAQLIILDLDVALPPTVP
SLTDATTDHVASSPAERSGPAPSAPRDVVASLVSTRFIKLTWRLPVEPHGENITYSVFYS
LDGTNRERVENTSGPGEMQVTIQNLVPDTKYTFRVVASNANGPGESSAPLTVATQLEVQV
PGPAPNLQVVSVGPASVALSWERPVNGNGDIQTYKLFYSEKGDSEQDMDVTGLSYTMTGL
KKFTEYSFRVVAYNKHGPGVSTDDVAVRTLSDVPSAPPQNLTLEVLNSTSIMVRWQAPPP
GTLNGELMGYKLRYRKGLRRADAIEISTSQLFQLIDGLEKGKVYTVRVSATTVNGTGPTT
EWIAAETFENDLDESQVPGVPSSLHVRPLVNRIVVTWTPPENQDILVRGYKIGYGIGSPH
AHTVNLDYKQRFYSIDNLDPSSHYVITLKAFNNMGEGVPIYNSATTRPQSDPIDPDIDFY
ELFNNPYTPAPDPTPMLPPVGVQATVLSHDTVKVSWADNSLAKNQKITDSRYYSIRWKTN
IPANTKYKTANTTSLFHTVTALKPNTLYEFSVMVTKSRRSSTWSMTAHGTTSETLPASAP
KDVTVISKEGNPRIININWQPPTEANGKITGYIIYYSTDVNAEVHNWVVEPVVGNRLTHQ
IQGLTLDTAYYFKIQARNSKGMGPMSDAVHFRTPKAEPSDKMSSDQGLQVKPGHPTLPEH
GIGSNMDKPGITGSHENHILVIVVIVSVGAFTIIAVVVGAVLCTRRSNSHQKKKRAACKS
NTGSHKYKSSSKDLKPPDLWIHHERLELKPIDKSPDPNPVMTETPIPRAAQDPVEPSHQI
QELEESVSTRRGVRPKIMMPFDSQPPQPVISAHPIHSLDHLHHHHHHYHLPPRGYLHHQI
SLRAPASPNTHLHRSPSAESVRNQPAAPEPPVAPSQPITSAELQKTEALIKEEDLPSINP
PTAHIRPTHPLKSFAVPALTVSAHNPPTYETALPSTPLLAQPAPGVKTASIGTLNRARAP
MPVTVPNAPDQSETSKMLDMTYETDELSEEMAHLEGLMKDLNAITTG
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggggggcacggctgctcgtgtttttcacaagtctcatcgttctccggttc
ggcggtgcggataaaggttctgccattcgaggtttcaccccgttcaggttctctgttgaa
ccggtggacacgctagccgtacgcgggctccccgctgtgctgaactgctcagccgctagc
ggcgctcccgtacgggtggagtggaagaaggatgggacgttcctgaacctggtggcggac
gaccggaaacgacagctagccgacggctctctgctcatcagtacggtggtccacaataaa
cacaataagcctgatgagggggtgtaccagtgcgtggccaccatcgacaatctgggtacc
atcagcagccgaaccgcacgactcacagtggcaggacttccgcggttcctcagtcagccg
gagggcgtatctgtgcgcatgggcggctctgagatgctgagctgtgaggtgacggaggag
ctcgtcccgttcacacgctgggagagggacggtcggcccgtggaactggatgccagagtg
attcagcttcccagtggagctctggtcatcagcaacgcctcccagaccgacgctggactc
taccgctgcacaatagatgctctgggaccgccaaaaaccacagaggaggctgaactacag
gtgtccgcagattcgggtgttgaagaaaagctagagactctccagggcccggttgctgtt
gcgaaggttgtcggggagagcgtgctgttgccatgcgtcatgaagggatacccggttccc
gtgatccgctggacgtttaacgaccgctcgattgacgaaggtcatgagcgttttgctgtg
attggcgggggaagcctgcagatcgtcaacctgacagaagaggatgctgggatatacgtc
tgccagacggacagtggcaacatgaccagcgagatccaggcagagctcacggtgcacgtt
cctccacggttcgtgacgagaccctccaacacttacgcccaggagtcgatggacatcatc
tttgagtgtgacatcaccgggtccccgccgcccaccgtcagatggatgaaggacggagac
acggtcattcccagtgactatttcaggatagtgaagcagcataacctgcaggttttgggt
ttagtaaagtcagatgaaggtttttatcagtgtttagcggaaaacgacgccgggaacgtc
caggccagcgctcagctcatcatactggatttagacgttgcccttcctcctactgtccct
tcattgaccgatgccactactgaccatgtagcgtccagtcctgccgagcgcagcggtccc
gctccttctgccccgcgggatgttgtggcgtctctggtgtccactcgattcatcaagctg
acctggcgtctacctgtcgaaccgcacggggagaacatcacctactctgtgttctacagt
ctggacggcactaacagggagcgtgtggagaacaccagcggaccgggagagatgcaggtc
accattcagaacctcgtccccgacaccaagtacacgtttcgggtggtcgcgtccaacgct
aacggcccgggcgagagctctgccccgcttacggtggccacccagctggaggttcaggta
ccgggtccggccccgaatctgcaggtggtctcagtcggacccgcttcagtcgctctgagc
tgggagagaccggtcaacgggaacggggacattcagacatacaaactcttctacagtgag
aagggagactcggagcaggacatggacgtcacgggtctgtcctacaccatgacggggctc
aagaagttcacagagtacagtttcagggtggtggcgtacaacaaacacgggcctggcgtc
tccaccgacgacgttgcggtccgaacgctgtctgacgtgccgagcgcccctccgcagaac
cttactctggaggtcctgaactcgacgagcatcatggtccgctggcaggcgcccccccct
ggtaccctgaacggagagctgatgggatataaactacgctaccggaaaggactgaggaga
gccgacgctatagagatctcaacctcacagctctttcagctcattgatggtctggagaaa
ggaaaggtttacacggtgagagtgtcggccaccactgtgaacggaaccggaccaacgacg
gagtggatcgcagcggaaaccttcgagaacgacctcgacgagtctcaggtaccaggagtc
cccagttctcttcatgtccgtcctcttgtgaaccgaatcgtggtgacttggactcctcca
gaaaaccaggatattttagtccgaggttataagatcggatatgggattggaagccctcat
gcccacacggttaatctggattacaagcagcgtttctacagcatcgataacctcgatccc
agttcccattacgtcatcactctcaaggcgttcaacaacatgggcgaaggcgttcccatc
tacaacagcgccacaactagacctcagtccgaccccatagaccctgatattgatttttat
gaactcttcaataacccatacaccccagcccccgaccccacacccatgctgcccccggtg
ggcgttcaggccactgtcctcagccacgacaccgtcaaagtcagctgggccgacaactcg
ctcgcaaagaaccagaagatcaccgattccagatattactccatccgctggaagaccaac
atccccgccaacaccaaatataagacggcaaacaccacgtctctgttccatacggtgacg
gctctgaaacccaacacgctttacgagttctccgtgatggtgaccaagagccgccggagc
agcacgtggagtatgacggcccacgggaccacctctgagacccttcccgcttctgctcca
aaagatgtgactgtgatcagtaaagagggaaatccacgaattatcaacatcaactggcag
cctccaactgaagccaacggcaaaatcacagggtacatcatctactacagcaccgatgtg
aacgctgaggttcataactgggtcgtggagcctgtggtgggaaaccgactgacccatcag
attcagggtctcacactggacactgcttactactttaagatccaggccagaaactccaaa
ggcatgggacccatgtcagacgcggtgcactttcgcacgccgaaagctgaaccatctgac
aaaatgtcaagtgatcaagggctgcaagtcaaacctggtcacccgaccctgccggagcac
gggatcggatccaatatggataagccaggcatcacgggcagccatgagaatcatatcctg
gtgatcgtggtcatcgtgtctgtgggagcgttcactatcatcgctgtggtcgtgggagcc
gtcctgtgcacgcgccggtccaactcccatcagaaaaagaaacgtgcagcctgtaagtcc
aacaccggctcacacaagtacaagagctcgtctaaagacctgaagcctcctgatctctgg
atccatcacgagcgtctggagctcaaacccatcgacaaatctcccgatcccaacccggtc
atgacggagacgcccatccctcgcgccgcccaggacccggtggagcccagccatcagatt
caggagctggaggagagtgtgtccactcgcaggggagtcagacccaaaatcatgatgcca
ttcgactctcagcctccccagcctgtgattagtgctcaccccattcattccctcgatcat
cttcatcaccatcatcatcactatcacctcccgccgcgcggttaccttcatcaccagatc
agcctgagagcacccgcctccccaaacacacacttacacaggtctccgtctgcagagtct
gtgaggaaccagccggctgcacctgaacctccggttgcccccagtcagcccatcacatca
gctgagctccagaagactgaggcgttgatcaaagaggaagatctccccagtataaacccc
ccaacggcccacatccggcccacacacccgctcaagagcttcgctgtgccagcgctcacg
gtttctgcccataacccgcccacctatgagacggccttacccagcacccccctgctggct
cagccagcgcccggtgtgaaaactgcgtccatcgggacactaaatcgagctcgagctcca
atgccagtaacagtcccgaatgctcctgaccaatcagaaaccagcaagatgctggacatg
acgtatgagaccgatgagctctcagaagaaatggcccacctggagggtttgatgaaggat
ctgaacgccatcactacaggctga
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