Rhodococcus koreensis: JWS14_11710
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Entry
JWS14_11710 CDS
T07497
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rko
Rhodococcus koreensis
Pathway
rko03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JWS14_11710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rko03400
]
JWS14_11710
Enzymes [BR:
rko01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JWS14_11710
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JWS14_11710
DNA repair and recombination proteins [BR:
rko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JWS14_11710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
QSE79767
LinkDB
All DBs
Position
complement(2526905..2527771)
Genome browser
AA seq
288 aa
AA seq
DB search
MPELPEVEALAEFLREHAVGAVVGRVDVAALSVLKTFDPPITALQGRDVTGAARFGKHLA
LDCSGLWLVTHLSRGGWLRWTDNPSVAPPKPGKGPLALRVHFFTPEGATPAFDLTEAGTK
KRLAVWLVHDPQEVEGIARLGPDALAVTEPEFAALLSTTSARIKNALVDQSLLAGVGNAY
SDEILHTAKISPFATSRTLPEDQVHVLYDAMRSVLTDAVDRSLGQDAARLKGEKRSGMRV
HARTGLPCPVCGDTVREVSFAEKSFQYCATCQTGGKVLADRRMSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcccgaggtggaggcgttagccgagttcctgcgtgaacacgccgtggga
gcggtcgtgggccgggtggacgtggcggccctgagcgtgctgaagacgttcgaccccccg
atcaccgccctgcagggccgcgacgtcacgggtgccgcccggttcggcaagcacctcgcg
ctcgactgctccgggttgtggctcgtcacccacctgtcgcgtgggggctggctgcgctgg
accgacaacccgtctgttgcgccgccgaaaccgggcaagggcccactggcgctgcgggtg
cacttcttcaccccggagggcgcgacgccggcgttcgacctgaccgaggctggcacgaag
aagcggctcgcggtgtggctggtgcacgacccgcaggaggtggaggggatagcccggctc
gggcccgatgccctcgccgtcaccgaacccgagttcgcggcgctgctgtccaccacgtcg
gcgcggatcaagaacgcgctcgtcgaccagtcgctgctcgccggcgtcggcaacgcctac
tccgacgaaatcctgcacaccgcaaagatttccccgttcgcgacgtcacgcaccctgccg
gaagaccaggtgcacgtgctgtacgacgcgatgcgttccgtgctcaccgacgccgtcgac
aggtcgctcggccaggacgcggcacggctgaagggggagaagcggtccgggatgcgcgtc
catgcccgaaccggtctgccctgccccgtctgcggtgacaccgtgcgagaagtgtcgttc
gcggagaagtcttttcagtactgcgcgacgtgccagaccggaggcaaggtgctcgccgac
cgccggatgtcgcggctgctgaagtag
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integrated database retrieval system
