Rhodococcus koreensis: JWS14_48380
Help
Entry
JWS14_48380 CDS
T07497
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rko
Rhodococcus koreensis
Pathway
rko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWS14_48380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rko03019
]
JWS14_48380
03016 Transfer RNA biogenesis [BR:
rko03016
]
JWS14_48380
Enzymes [BR:
rko01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JWS14_48380
Messenger RNA biogenesis [BR:
rko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JWS14_48380
Transfer RNA biogenesis [BR:
rko03016
]
Prokaryotic type
tRNA degradation factors
JWS14_48380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
dsrm
Motif
Other DBs
NCBI-ProteinID:
QSE86857
LinkDB
All DBs
Position
unnamed2:complement(383533..385410)
Genome browser
AA seq
625 aa
AA seq
DB search
MTSSTVTDVSTLLMIDSASARDRDDAFSVTPFPDGRGWTIEVHLAGVADVVELGSVADEQ
AFLRAETRYLRSRTIPMLGDTAEQAATLTAEAVRTSLRVTGTITTDGRLVDTAVDRGEIP
SGRCVAVDHTQVPGILTDPADPLHPQLAAADAAAQVLLTARRDGGALAFYDLTQGWAANE
DGAIVAIAAELRTVAYVIVQELMIATNEAVALWCVEQGLPILFRNHRPNPVAGSTDELMT
EIAAAAGDPDLFAKLRGRLLSTLRAATYDPTVHGHYGLRLSGYSHVTSPLRRVADLINQR
IIFAHLDHSPTPYTPDQLAALGADLNRRTRAAREAKKNHFKHADQRIVAEQAATADLTAL
DSRRFHKVLKAEAAGPLRAELAAEVVRRVDADLMTAPDVAVLIDAADPTWLPIQLRVLDT
LAATHPEMGPSVVSVWRQAHDQPPTDVEIRRNGADHNPLFAARATHRSIRGPWATAAAKK
PAEQAALWAAVRAQLIGTDHPDTAPDWPTIEPSPQPTTPPPAPEDSGPAKSAAPHRTTAP
AALNLDGAKKSKALSNPTAWLMSLAQNNNQPPPVWAFHTDGPPHAPRFTATVHLAGHTAT
ADATTKTVAKTASATALIQALFARQ
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgacatcttcaacagtcaccgacgtgtcgacgctgctgatgatcgactcggcatctgcg
cgggaccgggacgacgccttctccgtcacccccttcccggacggccgcgggtggacgatc
gaagttcatctcgccggcgtcgccgacgtcgtcgaactggggtcggtcgccgacgagcag
gcgttcctgcgggcggagacccggtacctgcgcagccgcaccattccgatgctcggcgac
acggccgagcaggcggccaccctgaccgccgaagccgtgcggaccagtctgcgggtcacc
ggcaccatcaccaccgatggccggctggtcgacaccgccgtcgaccggggggagattccg
tcgggccggtgcgtggccgtcgatcacacacaggtgcctggcattctgaccgacccggca
gatccgctgcaccctcagttggccgcggcggatgcggccgcgcaggtcctgctgaccgcc
cgccgcgacggcggcgcgctcgcgttctacgacctcacccaaggttgggcggcgaatgag
gacggggccatcgtggcgatcgccgccgaactgcggaccgtcgcctacgtcatcgtgcag
gagctgatgatcgccaccaacgaagcggtggcgttgtggtgtgtggagcagggattgccg
atcctattccgcaaccaccgccccaacccggtcgccggcagcaccgacgagctgatgacc
gagatcgccgccgcggccggggacccggacctgttcgcgaaactccgtgggcgcctgctg
tcgacgctgcgggccgcgacctacgatccgacggtccacggccactacggtctccggttg
agcggctatagccacgtcacctccccgctgcgccgggtggccgacctgatcaaccagcgg
atcatcttcgcccacctcgaccactcccccaccccctacaccccggatcagttggcggcc
ctcggcgccgatttgaaccggcgcacccgcgccgcccgggaagcgaagaagaatcacttc
aaacacgccgaccaacgcatcgtcgccgaacaggcggccaccgccgatctcaccgccctc
gacagtcgacgattccacaaggtcctcaaagccgaagccgccggaccacttcgggccgaa
ctcgccgccgaggtcgtccgccgcgtcgacgccgacctgatgaccgccccggacgtcgcg
gtcctgatcgacgccgccgaccccacctggcttcccatccaactccgcgtcctggacact
ctcgccgccacccacccggagatgggacccagcgtggtgtcggtgtggcggcaagcccac
gatcaaccgccgaccgacgtggagatccggcgcaacggcgccgaccacaacccactgttc
gccgcccgcgctacccaccgcagcattcgcgggccgtgggccacggcggccgcgaagaaa
ccggccgaacaggccgccctctgggcggcagtgcgcgcgcaactgatcggcaccgaccac
cccgacacagcaccggactggcctaccatcgagccatccccgcagccaacgactcccccg
ccggcgccggaggattccggtcccgccaaatccgcggcaccacaccgtacgaccgctccg
gccgccctgaacctggacggggcgaagaaatccaaggcactgtccaaccccaccgcctgg
ctgatgagcctcgcccagaacaacaatcagcccccgcccgtgtgggcgttccacaccgac
gggcccccgcacgcaccccggttcaccgccaccgtgcacctcgccggccacaccgccacc
gccgacgcaaccacgaaaaccgtggcgaagaccgcatcggccaccgcgctcatccaggca
ctcttcgcccggcaatga
DBGET
integrated database retrieval system
