Candidatus Rickettsia kotlanii: FLA4_02570
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Entry
FLA4_02570 CDS
T09157
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rkt
Candidatus Rickettsia kotlanii
Pathway
rkt03030
DNA replication
rkt03430
Mismatch repair
rkt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rkt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FLA4_02570 (dnaE)
03430 Mismatch repair
FLA4_02570 (dnaE)
03440 Homologous recombination
FLA4_02570 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rkt03032
]
FLA4_02570 (dnaE)
03400 DNA repair and recombination proteins [BR:
rkt03400
]
FLA4_02570 (dnaE)
Enzymes [BR:
rkt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FLA4_02570 (dnaE)
DNA replication proteins [BR:
rkt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FLA4_02570 (dnaE)
DNA repair and recombination proteins [BR:
rkt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FLA4_02570 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF5487
Motif
Other DBs
NCBI-ProteinID:
BDU59847
LinkDB
All DBs
Position
complement(228955..232500)
Genome browser
AA seq
1181 aa
AA seq
DB search
MQPEFIHLRTQSSYSFLESALTVEKVVELASSNKMPAICLADKGNLFGSLEFALYAVKKG
LQPIHGIILNIKYDIDVFAQILLIAKDETGYKNLLKLSSLTFTKNDRKICDHIDFEDLIE
YQEGLIGLCCYTDGIVGKYLLARNEEQAMLFARKLQEILGDRFYFEIMRHELPEEQFIED
SYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKTVSENCYFRSSH
EMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDISETDLIRKDAKEGLLARL
ATKFKSENISLENQEEVKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGP
GRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRS
KYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSAINPVSLEQAMREV
PELANAAKGNGLYNLDGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVY
KDANSDMLVVGYSMKYAEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDN
KTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKH
KLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEME
EQEEIFVKGAVANNISESQAKSIFATVAKFAGYGFNKAHAASYGVISYQTAYLKANYPAE
FLVACLNLELNNHDKINLFLQEAKDNGIKITAPNINISEGYFSVKFSDTVIPYSVKSVIP
RLDRGIQEISKDTVVKPRYNIAGAIIFALGAIKGVTPNFGKLVTDERKARGVFKSITDFI
ERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYSTLYHEEQESNQLSLIKV
SSLSPTILVLSDYADKNTLAFYEFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPD
GTNRVNLAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIFSEEVLKDYVHLLDVKSLVV
VNCDIVKDKGGIKLTAKSFSSIEDAINNKRFELQFYPQNHEELRQIVTLLAARINNENQS
NAKATIYLQSADVKNFVAKITLPEKFLLQGQDFEILKGYSK
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctgaatttattcatttaagaactcaaagctcttattcttttctagaaagtgca
ttaacggttgagaaggtagtagaacttgcttcatcaaataaaatgcctgctatttgtttg
gcagataagggaaatttattcggctcattagagtttgcattatatgcagtaaaaaaagga
ctgcagccgatacatggaattattctaaatataaaatacgatatagatgtttttgctcaa
atcttgcttatagctaaagatgaaacgggctataaaaatttactcaaactatcaagcctt
acttttactaaaaatgatcgtaagatatgcgatcacattgattttgaagatttaatcgaa
tatcaagaaggattaataggattatgttgttataccgacggtattgtcgggaaatacttg
ctagctcgcaatgaggagcaagcgatgttgtttgcacgtaaattacaggaaattttagga
gatcgtttttactttgagattatgagacatgagctaccggaagaacagtttattgaggat
agttatattagaattgctgctgagcttgctattccgcttgttgctactaataaagttttg
tttagtgagaaaagcatgcatgatgcacatgatgtattgttatgtatatcagctggtgtt
actaaagaatatctggatcgaaaaacagttagcgaaaattgttattttaggtcatcgcat
gagatgatagagcttttttccgatttacctagtgccatccaaaataccgtgaatttaagg
gagcgttgttattttgccgcacatgcaaacccgccgatgctgcctaattttgccaccaag
gatattagtgaaacggatttaattagaaaagatgcaaaagaaggtttgcttgcaaggctt
gctacaaagtttaaatctgaaaatatttcgttagagaatcaagaagaagtaaaaaccgaa
tattttgctcgtcttaattatgagctggatattatctgtaatatgaattttgccggttat
tttttgattgtatctgattttattaaatggagtaaaaaagagggtattttagtcggaccg
ggtagaggatcgggagcaggttcggttgttgcttggagcttgcttattactgatctcgat
ccgattaaatttggcttattatttgaaagatttttaaatcctgaacgtatttcaatgcct
gattttgatattgatttttgtcaggaaaggcgtgaggaagtaattaattacgtacgttcc
aaatacggtaataatagagtaggacagattataacttttggtaagatgcaggcaaaggct
gtaattaaggatgttgctcgtgtgcttagcttaccttataaattcgctgattatctaacg
gagcttgtcccttttagtgcaattaatccagttagcttagaacaggcaatgcgtgaagtc
ccggagcttgcaaatgccgctaaaggtaatgggctgtataatttagatggtgaagcggag
ttaattaagctagtgcttgatacttcgttaattcttgaggggctgcataggcattcctca
actcatgctgcaggaatcgtaatagcaggtactgatttagtcgatatagtaccggtatat
aaagatgctaactctgatatgctggtagtcggttattctatgaaatatgctgagattgcc
ggtttaattaaatttgattttttagggctacaaaccctaacggttattaccgattgtaag
aaactgcttaaagagcaagggatagaagtagattttaacaatatgacgtttgatgataat
aagacttatcaaatgttgtgtaaaggtaaaggagtcggtgttttccaatttgaaagtatc
gggatgaaagatgcacttagacgccttaaacctgattctatacatgatttgatagcgctt
ggtgcgttataccgtcctggtcctatggaaaatattcctacctatatagcttgtaagcat
aaattacaacagcctgattatttacatgagttattgaagccaatcttagaagaaacttac
ggcgtggtgatatatcaggagcaggtacaaagaattgctcaggttcttgcaggttatacg
ctaggagctgccgatttacttcgtagagccatgggtaagaagataaaaaaagaaatggag
gagcaggaagaaatttttgttaaaggagcagttgctaataatatttcggaatctcaagct
aaatccatttttgcaaccgtggctaaatttgctggatacggttttaataaggcacatgct
gcgtcttacggtgttatttcataccaaactgcatatcttaaagctaattatcctgctgaa
tttttagtagcatgcttaaatcttgaattaaataatcacgataaaattaatttattttta
caagaagcaaaagataacggcataaaaattactgcacctaatattaatatttctgaaggg
tattttagtgtaaagttttcggacactgtcatcccgtatagcgtaaagtctgtcatcccg
cgacttgatcgcggtatccaggaaatttcaaaagatactgtggtcaagccacgttataac
atcgcgggtgcaataatcttcgctttaggtgctattaagggagtcacgccgaatttcggt
aagttagtaacggatgagcgaaaagcaagaggggtgtttaaatcaattactgattttatt
gaaagattaccccccaaatctattaacagtaaattattggaaaatttaatcaagtcaggc
tgttttgatgagctgcatgataatcgattgcaattattgtcaagcattccaaaattgctt
tcttattcaactttatatcacgaagagcaggaatctaatcaattgagcttaattaaagtt
tctagtttaagtccaactattttagtattaagcgattatgccgataaaaatactttagcc
ttttatgaatttgaggctatgggtttatttatctctaatcatcctcttacggaatatcaa
gaaatatttagtcgtttaaatattttaaatactgcggatttgcataataacttacctgat
ggtactaaccgagtaaatcttgccggtgtaatacaaaaaaaggattctcgtatgtcggca
agaggtaggtttgtgacgctcgtgctttccgatcctgagaatatctttgaacttagtatt
tttagtgaggaagttttaaaagattatgtacatttacttgatgttaaaagtttggtagtt
gttaattgtgacatagttaaagataagggaggaataaaactaacggcaaaaagcttttca
tcaattgaggatgcaattaataataaacgatttgaactacagttttatccacaaaatcat
gaagaattacggcagatagtcaccttgcttgcagctcgtataaataatgaaaatcagagt
aatgctaaagctacaatctatttacaaagcgcagatgtaaagaattttgtagcaaaaatt
acattacctgaaaaatttttgctccaagggcaagattttgagattttaaaaggatatagt
aaatag
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