Rhodoluna lacicola: Rhola_00002700
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Entry
Rhola_00002700 CDS
T03203
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rla
Rhodoluna lacicola
Brite
KEGG Orthology (KO) [BR:
rla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rla03019
]
Rhola_00002700
Enzymes [BR:
rla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Rhola_00002700
Messenger RNA biogenesis [BR:
rla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Rhola_00002700
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
nSTAND3
ResIII
AAA_30
nSTAND_NTPase5
WHD_HA2
SRP54
PhoH
SLFN-g3_helicase
FtsK_SpoIIIE
UvrD-helicase
T2SSE
AAA_23
AAA_24
AAA_16
NACHT
TsaE
Motif
Other DBs
NCBI-ProteinID:
AIC47093
UniProt:
A0A060JKG9
LinkDB
All DBs
Position
274042..277683
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AA seq
1213 aa
AA seq
DB search
MSTPESTALQITYPVDLPVSQRRQEILEAIRDNQVVVIAGATGSGKTTQIPKMCLELGRT
SIAHTQPRRIAARAVAERIAEELKVELGDLVGYQVRFTDKAGANTKVKVMTDGILLNAMQ
RYRNLEPYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIVTSATIDPESFSRHFND
APIIEVSGRTFPIEIRYAETAREAGDDTDPDEETTASDYLDGIVKALDDLQYEPDGDTLV
FLSGESEIRDAQEAIEGRINSGALGKGVEVLPLYGRLSAAEQHRVFESSKMVGLKRRIIL
ATNVAETSLTIPNIKYVIDAGTARISRYSPRAKVQRLPIEAISKASANQRAGRAGRTSPG
VVIRLYSEDDYESRPEFTDPEILRTNLASVILQAAQLGLGDITAFPFLQAPDARGVQDGL
GLLGELGAVKDPKGKTVELTKVGRELARLPIEPRFGRMLLESKKHDLVREVMIIVAGLTI
QDPRERPLAKRPQADQAHARFADPTSDFLSLLNLWNYIEEQQKKLSSSAFRRLCKNEFLN
YLRVREWQDLIKQLKSIAKPLDILPGNPKVNPDGIHQCLLAGLLSQIGLKQLSDKKAADQ
VKKNSDKPVRASNEYLGSNGKKFVIFPGSTLAKKPPAAIMSAELVETSRLFARMNAAINP
EWAEPLAGDLVKRSFSEPHWEKSQGAVVAYERVMLFGVPIVVSRRMQYSRIDIPLCRDLF
IRHALVHGEWDSKQAFDRANQQLLKQLESLADRARKPQFAPDDEDVFRFYNARIPQDVFS
TRTFEGWWRKAKHETPELLTMTRDDLLPPEVQAPSDADNPKIWNFGERELKLRYRYEPGA
PDDGVTVDVPVSLLAQINSDEFDWLVPSMRVDLIAELIRGLPKNLRRTVVPAVDWAKKAI
AALPEHPDEALLATLAKTLRTLSGTHMTADDFDFAALPTSLRMTYRVVDEKGRTLGLGLD
LAALQQKLIPVANGEAPKKVVPDIAKKTSELASAVREKIASPADYVAEHLSKEEKLSLVA
VGYKNSAAFVDDVITALINQEITARGLDANPDDLRAAVVERSIEQCFDAAKVLEKISTHY
RQTSKAISEVQDLSVLHVLAAEKAHIADLMRSNIISATGIERITRIPIYLQASKMRIEKL
LENPERDRIAELELNEALALVEKTPADKMPEEKLQTVRWMIEELRVSLFAQVLGAAETVS
VQRIKKALNSAVG
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
gtgagcactcctgagtcaactgcgctgcagataacctacccggttgatctgccagtaagt
cagcgccggcaggagatccttgaggccattcgcgataaccaagttgtcgtgattgccggt
gccaccggttcgggcaagaccacccaaattccaaagatgtgcctggagcttggccgcacc
agcatcgctcacacccaacctcgtcgcatcgcggcccgcgccgtggccgaacgaattgcc
gaggagctaaaagttgagcttggcgatttggttggctaccaggtgcgcttcaccgataaa
gccggggccaacaccaaggtaaaggtaatgaccgacggcattttgctgaacgcgatgcag
cgctaccgaaaccttgagccatacgacaccatcatcatcgatgaggcacacgagcgcagt
ttgaacattgatttcttacttggctacctgaagcaacttttacctaagcgcccagacctc
aaggtcattgtcacctcggcaactattgacccggaatctttcagcagacacttcaacgat
gcgccaatcattgaagttagtgggcgaacttttccgattgagattcgctatgccgagacc
gcaagggaagccggtgacgacactgaccccgatgaagaaaccactgccagtgattatttg
gatggcatcgtcaaggcactagatgatttgcagtacgagcccgatggcgacactttagtt
tttctctccggtgaatcggaaattagagatgctcaggaagctatcgaggggcggattaac
tctggtgcactgggtaagggtgtggaggtgctaccactttacggacggctaagtgccgct
gagcaacaccgagttttcgagagcagcaaaatggtagggctcaagcgaagaatcattctg
gccaccaacgttgccgagacctcgctgacgattccaaacattaagtacgtaattgatgcc
ggtaccgcgcgtatttcgcgctacagcccaagggctaaagttcagcgattgccaattgaa
gcaatctcaaaagctagcgccaatcagcgtgccggtcgtgccggtagaaccagcccgggc
gtcgtgattcggctttactcggaagatgattacgaatccagaccggaattcaccgatcct
gaaattctgcgcaccaaccttgcctcggtaattctgcaagccgcccagttggggcttggg
gacatcacagcattcccctttctgcaggcacctgacgccagaggagtacaggacggcctt
ggccttttgggtgagttgggcgcggtaaaggaccctaagggaaagacagttgagctcacc
aaggtgggccgggaattggccagattaccaattgagccgcgctttgggcgcatgcttttg
gagtcaaagaagcacgacctagtgcgagaggtcatgatcatcgtggccggacttaccatt
caggatccgcgtgagcgccctttggctaagcggccgcaggccgatcaggcgcacgcaaga
ttcgccgacccaaccagtgatttcttaagcctgctgaatctttggaattacatagaagag
cagcagaaaaaactttcatcatcagcttttcgtaggctctgcaaaaacgagttcttgaat
tacttgcgagtgcgtgagtggcaagacctaatcaagcaattgaagtcgattgctaaaccg
ctagacatcctgcccggtaatccaaaggtcaaccctgatggcattcaccagtgcttgctg
gccggtttgctcagtcaaattgggctgaagcaactgagtgataaaaaagctgccgatcag
gtaaagaaaaattcagataagccagtcagggcgtcaaacgagtatctgggttcaaacggt
aaaaagtttgttatttttcctggttcaactttggccaagaagccacccgcggcaatcatg
agtgctgagttagtggagaccagtagattatttgctcgcatgaatgcggctataaatcct
gagtgggcggaaccgcttgctggtgacttagtaaagcgcagtttcagcgagccacactgg
gagaaatcgcagggcgcagtagttgcctacgagcgcgtcatgctttttggagtgccaatt
gttgtgtcgcgtcgcatgcagtattcgcgaattgacattccgctttgccgcgacttattt
attcgtcacgctcttgttcacggtgagtgggattccaagcaggcttttgatcgcgcaaat
caacaacttctaaaacaacttgagtctcttgcagacagagctcgtaaaccgcagtttgcg
cccgatgatgaagatgtcttccggttctacaacgctcgaattccgcaggatgttttctca
actcgcacttttgaaggttggtggcgcaaggccaagcacgagacccccgagttgttgacc
atgacccgtgacgatctgctgccgccagaggtgcaggcaccaagtgacgcagacaaccca
aagatttggaattttggggagcgtgaactcaaacttcgctatcgctacgaaccaggcgca
cctgatgatggcgtcacggttgatgtgccggtttcgctgcttgcccagattaactccgat
gagttcgattggctggtgccgagcatgcgggttgacctgattgccgagctaatccgcggt
cttcccaagaacctgcgccgcaccgtggtgccggcggtggactgggccaagaaagcaatc
gccgccctgccagagcacccagacgaggccctgttagcaacgctggccaagactctgcgt
accctcagtggcacccacatgaccgctgacgactttgactttgcagccctgcctacctca
cttcgaatgacctaccgagtggttgacgaaaagggacgcacccttgggttggggctggac
cttgctgcgctgcagcagaagttgattccggtagcaaatggcgaagcaccaaaaaaggtc
gtgcctgatatcgccaagaagactagtgaactggcatcggccgtgcgcgaaaaaatcgca
tcacctgccgattacgttgctgagcacctaagtaaagaagagaaattatccttggttgcg
gttggctacaagaactcggcagcttttgttgacgatgtaatcaccgcgttgatcaaccaa
gaaattactgctcgtggtctggatgcaaacccagatgaccttcgcgcggcagtggtcgag
cgaagcatcgagcaatgctttgatgcggccaaggtgcttgagaaaatatcaactcactat
cggcagactagtaaagctatctctgaagttcaggacctttcagtactgcacgtgctggct
gccgaaaaagctcacattgcagatttgatgcgcagcaacattattagtgccacgggcatt
gaacgaattacaagaattcctatttatctgcaggctagcaaaatgagaattgaaaaattg
ctggaaaacccggagcgcgaccgaatagccgagctagaactcaatgaggcgctagcgctg
gttgaaaaaacccccgcagacaaaatgcctgaagaaaaactacagacagttcgttggatg
attgaagaactacgagtgagtttattcgctcaggttcttggtgccgccgagaccgtatcg
gtgcagcgcatcaaaaaggccttgaattcagcagtgggctag
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