Rhodoluna lacicola: Rhola_00003940
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Entry
Rhola_00003940 CDS
T03203
Name
(GenBank) Superfamily I DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rla
Rhodoluna lacicola
Pathway
rla03420
Nucleotide excision repair
rla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rhola_00003940
03430 Mismatch repair
Rhola_00003940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rla03400
]
Rhola_00003940
Enzymes [BR:
rla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rhola_00003940
DNA repair and recombination proteins [BR:
rla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rhola_00003940
MMR (mismatch excision repair)
Other MMR factors
Rhola_00003940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
AAA_11
PhoH
Motif
Other DBs
NCBI-ProteinID:
AIC47215
UniProt:
A0A060JEP5
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All DBs
Position
405192..406871
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AA seq
559 aa
AA seq
DB search
MPTETLLENLDPEQREAAESLVGPTCILAGAGTGKTRTVTHRIAYGIAKGYYAANRVLAL
TYTNRAAGELRARLRQLGIGAVSVKTFHAAALSQLEFFWPQFAGVPAPSVLESKARLISK
VADEAKIRLDAGALRDFAGEIEWRKYSMLSMDEYAGLVKTRPKVAGLSPAKNLELQRSYE
DAKIKAQKIDWEDVLVLTLGMLRAEPRALAHVQQQYRFFTVDEYQDISPLQHALLDTWLG
NHSDLCVVGDPNQTIYSFTGATSEYLQNFRSRYPDANLIQLTRNYRSTQQIVSFANRLTT
ESNLVEPLRSEGEVGLAPRSLSFATVADECAALASSIRTKLDQGVKPSDIAVLYRVNGQS
ESIEHALTQAGIDYQVRGGERFFNRPEIQNAIRAVRAEAVSPTNKSLFQTVTDIVRSLGW
QTQQPSEKGSPREKWESLNSFLAITEELPEDATISDFAKELDERQRSQHEPIKAAVTLST
MHAAKGLEWDLVFIVGLTEGYVPITYAQTDAEIREEQRLLYVGLTRARKELTISWARRDA
NSTRDREPSRFLNLLAPRV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgccaaccgaaacacttttagaaaacctagatcccgagcagcgcgaggcagctgaatca
ctagtggggccaacctgcattctggcaggtgcaggaaccggtaagacaagaacggttacc
catcgaattgcatatggaatagccaagggctactacgctgccaatcgcgtgctggcactt
acctacacaaaccgtgccgccggagaactccgtgccagacttcgacagcttggaattggt
gcggtttcggttaagactttccacgcggcggcgctttctcaattggaatttttctggccg
cagtttgctggtgtgcctgctccatcggtgttggaatctaaagcgcgactaatttcaaaa
gtcgccgatgaggcaaagattcgattggacgcgggcgccctgagggattttgcgggcgaa
atcgagtggcgcaagtattcaatgctcagcatggacgaatacgcgggcttagtaaagact
cggcccaaggttgccggcctcagccctgccaaaaacttagaactgcagcgcagttatgaa
gacgcaaaaatcaaggctcaaaaaattgactgggaagatgttctggtccttaccctaggt
atgttgcgggctgagccaagggcgctcgctcacgttcagcagcagtaccgatttttcacc
gtagatgaataccaagatatctctccgctgcaacatgcgctgctggacacttggttgggc
aaccactcagatctctgcgtggttggtgacccaaaccaaacgatttactcctttaccggc
gcaaccagcgagtacctgcaaaacttccgctcccgatacccagacgccaatttgatccaa
ctgactcgcaactaccgatcaacccagcagattgtttcattcgccaaccgacttaccacc
gaatccaacttggtggagccactgcggtcggaaggagaggttggcctggcacctcgttcg
ctttcgtttgcaaccgtggccgatgaatgcgcggctttggctagcagcattcgaaccaaa
ctagaccagggcgtcaagccaagtgacatcgcggttttgtatcgggtcaatggacaatct
gagtcaatcgagcacgcgcttacccaagccggcattgactaccaggtgcgcggcggcgag
agattctttaatcgccctgaaattcaaaacgcaattcgcgcggtgcgtgccgaggcggtt
tcgcccaccaacaaatccctttttcaaaccgtcaccgatattgtgcgttcccttggttgg
caaactcagcaaccatccgaaaagggttcacctcgtgaaaaatgggagtcgctcaactcg
tttttggcgattacagaagagcttcctgaagatgcaactatttcggattttgctaaagag
ttagatgagcgtcagcgatctcagcacgagccaatcaaggcagcggtgacgctgtcaact
atgcacgcggctaaggggcttgagtgggacctggtcttcatagttgggctgacagagggg
tatgttccaattacctacgcccaaaccgatgcagagattcgtgaagagcaacgcttgctt
tatgtggggcttactcgggcgcgaaaggaattaactatttcttgggcacgtcgcgatgct
aactcaacgcgtgatcgcgaaccatcccgctttttgaacctgctcgcgccacgcgtgtaa
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