Rhodoluna lacicola: Rhola_00010110
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Entry
Rhola_00010110 CDS
T03203
Name
(GenBank) transcription-repair coupling factor (mfd)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rla
Rhodoluna lacicola
Pathway
rla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rhola_00010110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rla03400
]
Rhola_00010110
Enzymes [BR:
rla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rhola_00010110
DNA repair and recombination proteins [BR:
rla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rhola_00010110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
MCM_WH_arc
Motif
Other DBs
NCBI-ProteinID:
AIC47810
UniProt:
A0A060JGF7
LinkDB
All DBs
Position
complement(1020317..1023871)
Genome browser
AA seq
1184 aa
AA seq
DB search
MSEENLKALSRLAALVSDGYPFAALQARVRNPRVDVVAPQGAHSTVLEVINQFRGDAKLA
QVQLVVVATGREAEDVAAALRSLSPQAEILEFPSWETLPHERLSPSPETVGKRLRVLHRL
NEISTLVQNKKLDHSVFVLASVRAVLQPVVAGLANHPPLKLERGKDYLLFEMSLKLVELA
YQRVDMVTRRGEFAVRGGILDIFPTTAEHAMRLEFFGDELDDIRVFSVADQRTITGEEAG
SKIDAIEIYPAREIIITPNVASRAREMMHEFPNISTMLAKISEGIPVDGMESLAPVLVDA
MVPFTDYLPEGAVAVLLSPEKSAARAANLVETNEEFLHAAWDAAVEGAQAPLDLSDGGFI
DLSQFKDGLAGRALITVSQFGADDDSLVDLKLYEIPNFKGLDTTSIEWLEDQAKQGQQVI
VVAEGHGTVERLNEQLNAAGINAQVAQGNLRKGFTAPDSKVIVITESEFYGKSSVYVSPQ
VRKLASKRGQAVDPLSLKQGDYVVHETHGIGRFVELVERTSGVGRQQHQREYLLIEYAPS
KRGYPGDTLFVPTDQLDLLTRYVGGEAPVLSKMGGSDWAKVKGNARKAIRKIAIDLVKLY
SARMKSRGHAFGPDTPWQHELEEAFAFAETPDQLTTIDEVKRDMEKEIPMDRLLAGDVGY
GKTEVAVRAAFKAIQDGKQVAMLVPTTLLVRQHTDTFEARYAGFPVVVRSLSRFQSAKEV
KETLEGLENGSVDLVIGTHRLLSKNVKFRQLGLVIIDEEQRFGVEHKEKLKELKTNVDIL
SMSATPIPRTLEMAITGIREMSTLATPPEERHPILTYIGGYSEKQVAAAIRRELIREGQV
FFVHNRVSTIGLVANQLAELVPEARIAVAHGQMSEGALEQVVVDFWERKFDVLISTTIIE
TGIDIPNANTLIVDRAENFGLSQLHQIRGRVGRSRERAYAYFFYDPSKPLTETAHDRLAT
IAQNNELGAGMQVALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMIGEAVAEFKGEKQE
SPAELKLELPVDAHIPSTYVDSERLRLEAYHKLSAASGERGTRAQLDAILAELEDRYGAA
PEPVKNLIAVTELRQQANRLGLKDFNVLGLQAKLQPVELTESEQVRIASLYPGTKYLQTA
QTLLINAPRDENFEPLRDTAIIQWAWALLAKVFSNTESSANDQA
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaagaaaatctcaaggccctgtcgcgccttgccgcgctcgtttcagatggatac
cccttcgcagccctgcaggccagggtaagaaatcctcgggtcgacgtggtcgctccccag
ggtgcgcactccacggtgttggaggtaattaaccaatttcgcggcgacgcaaagttagcc
caggtccaactggttgtggttgccaccgggcgcgaagcagaagatgtggctgctgcccta
aggtcactttctcctcaagcagagattcttgaatttccatcgtgggagaccctgccgcac
gaacgtctgagccccagtcctgaaactgtgggcaagcgcctaagggtattgcaccgacta
aacgaaatttcgactctagttcagaacaaaaaacttgatcactcggtgttcgtcttggcc
tctgttcgtgcggttttgcagccggttgtcgctgggttggctaatcacccgccgctaaaa
cttgaacgcggcaaggactacctgctttttgaaatgtcgctcaagttggttgagctggcc
taccagcgcgtcgacatggtgactcgccgtggcgagtttgcggtgcgtggagggatccta
gacatcttcccaaccacggccgagcacgcaatgcgacttgagttttttggcgatgagtta
gatgacatcagagtcttcagcgtggcggatcagcgaacaataactggcgaagaggctggt
tcaaaaatcgacgcgatcgaaatttatccggccagagaaattatcatcactccaaacgta
gccagtcgcgcgcgcgaaatgatgcacgaatttccaaacatctcaaccatgttggccaag
atttccgagggcattccggtagacggcatggaatctctggctcccgttttggtagatgcc
atggttcccttcaccgattaccttcctgagggtgcggttgccgtattgctttctcctgaa
aaatctgcggctcgtgcggccaacctggttgagacgaacgaggagtttttgcacgctgcc
tgggatgctgcagttgagggagcacaggcgccacttgatttgagcgacggcggatttatt
gacctgtcgcagttcaaagacggcctcgccggtcgcgcactaataaccgtttcgcaattc
ggcgccgatgatgattccttggttgatttaaaactttatgaaattccaaatttcaagggc
ctcgacaccacttcaattgaatggcttgaagatcaggctaagcaagggcagcaggtgatt
gttgttgcagagggtcacggcaccgtcgagcgcctaaacgagcagctgaacgcggctggt
atcaatgctcaggtagcacagggaaacttgagaaagggattcaccgcgcctgatagcaaa
gtaattgtcatcactgaatccgagttttacggcaagtcatcggtgtatgtaagccctcag
gtgcgcaagctggccagtaagcgtgggcaggccgttgatccgctgagcttgaagcagggt
gattacgtcgtacacgagacccacggcattggtcgttttgttgaattggttgagcgcacc
agtggggttggtcgtcagcaacaccagcgcgaatatttgctgattgaatacgcgccatca
aaacgcggctatccgggcgacacgctatttgttcccacggatcaactggatttgctaacc
cgatacgttggcggcgaagcgcctgtgctgtcaaagatgggcggcagcgactgggccaag
gtcaagggcaatgctcgtaaggcaatccgcaagatcgcaattgacctggtcaagttgtat
tcggctcgcatgaaatcgcgcggccacgcctttggtccagacacaccttggcaacatgaa
cttgaagaagcattcgccttcgccgaaactccagaccagttgaccaccatcgacgaagtg
aagcgcgacatggaaaaagaaattccaatggatcgcttgctggcgggcgatgtgggatac
ggcaagactgaggtagccgtgcgcgcggcattcaaagcaattcaagacggcaagcaggtg
gccatgctcgtgccaaccacgcttttggttcgccagcacaccgatacctttgaggcccgc
tacgccggattccctgtggtggttcgttcgctgtctcgtttccagagtgccaaggaagtc
aaagaaactctggagggcttagaaaacggcagcgttgatttggtgattggaacacatcgc
ttgctttcaaaaaacgttaagttccgccagcttggtttggtgattattgatgaggagcag
cgctttggtgttgagcacaaagagaagcttaaagaactaaaaaccaacgttgacattctg
tctatgtcggcaacaccaattccgagaacgctagagatggcaatcaccggaatacgagag
atgtcaaccttggccacgccaccagaggagcgtcatccaatactcacctacattggcggc
tacagcgaaaagcaggttgccgcggctattcgtcgtgaactgattcgcgagggtcaggtg
tttttcgtgcacaaccgggtaagcacaattggcctagttgcgaatcaacttgctgaactt
gtgccggaggcacgcatcgcggttgcacacgggcaaatgtctgagggggctcttgagcaa
gtggtggttgatttttgggagcgcaagtttgatgtgctcatctcaaccacaattatcgaa
accggaatcgatattccaaacgccaacaccttgattgttgaccgtgccgaaaattttggc
ctgagccagttgcaccagattcgtgggcgagtggggcgcagtcgcgaacgcgcatacgcc
tacttcttctatgacccaagcaagccgctgactgagacggcacacgatcgccttgccaca
atcgcacaaaataatgaacttggtgccggcatgcaggtggcgctgaaagatctagaaatt
cgcggtgccggaaatttgctcggcggcgaacagtccggtcacatagccggcgttgggttt
gatctgtatctgcgcatgattggcgaagcggttgctgagttcaagggcgaaaaacaggag
tcgcctgcggagctcaaactggaacttccagttgatgcgcacatcccgtcaacctacgtt
gatagtgagcggcttcgccttgaggcctatcacaagttgtctgccgcaagtggagagcgt
ggaacccgtgcgcaacttgatgcaattcttgccgagttagaagaccgatacggtgctgca
cccgagccggtaaagaatttgattgccgtgaccgaacttcgccagcaggcaaatcgtctt
ggcctcaaagacttcaatgtgcttggcctgcaggcaaagcttcaaccggttgaactcact
gagtccgagcaggtgcgcatcgccagcctttacccaggtaccaagtatttgcagaccgcg
caaacactgctgatcaacgcaccacgtgacgaaaattttgaaccgctgcgcgacacagcc
atcatccaatgggcttgggccttattggctaaggttttttcaaacaccgaaagtagtgca
aatgaccaagcttga
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