Rhodoluna lacicola: Rhola_00012490
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Entry
Rhola_00012490 CDS
T03203
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rla
Rhodoluna lacicola
Pathway
rla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rhola_00012490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rla03021
]
Rhola_00012490
03400 DNA repair and recombination proteins [BR:
rla03400
]
Rhola_00012490
Enzymes [BR:
rla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rhola_00012490
Transcription machinery [BR:
rla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rhola_00012490
DNA repair and recombination proteins [BR:
rla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rhola_00012490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
SLATT_2
Motif
Other DBs
NCBI-ProteinID:
AIC48042
UniProt:
A0A060JHM2
LinkDB
All DBs
Position
complement(1245581..1249795)
Genome browser
AA seq
1404 aa
AA seq
DB search
MEVENFDALRVGLATSDDIRSWSNGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECS
CGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLAMA
PKDLEKIIYFAAYRVMGIHSEDRTLDAALIKDDYIHRMQTLWNSRLEEMLSVAQGEYDQL
TALGLALEPAIKLWEAPIWVDAQFAKSIEQLILAEEKNPEGFWGKKATAAAEEAADEENS
PVVRTPAEEKQIKALLSEFKKKTDKIVKEYARIERPANLQKEQLAWRLFLTLKPGDLIQN
DVIFDHFDYSFGEYFDTAIGAEAVQRVLAEFDLDAAAAELREAIATTKGTKQTQAIKRLK
VVQSFIGSSTPPTSMVLDVLPVLPPEIRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRF
IDLGAVPKTILNNEKRMLQEAVDALFDNGRRGRAVTGTGNRALKSLSDLLKGKQGRFRQN
LLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLGLAQNIKSAKRMV
ERSRPQVWGVLEEVIRERPVLLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCAAFNADF
DGDQMAVHLPLSVEAQAEARILMLASNNILKPSDGRPVAVPTQDMIIGLFHMTTLVEGAV
GEGNLYGSISEAIMAYDAKALDLQAKARIRLTNAGETKIYETTLGRALFNQALPDDYDYY
EGQVGKKEIGKIVAELVEKFSRVEVAQSLDRIKDAGFHWATRSGVSMSIADANFDSSGAF
DKARSKMIIDGEKEHTKIQEAFDNGLKSDLERRDELGALWFKRTNEIQNLLQESIPADNA
IFKMVTSGARGNWLQIRSIIGMRGPVATSSGDFAPMPVKGNYLVGLTANEYFINATGARK
GNADTAMKTAAAGYLTRRLVDVAQDVIVREPDCGTNKGLEKSLKDIDGNWDEQTIELSVL
HRALQSDVKVGSDVIAKAGQTVDQKIVDAFKAANVDTVGVRSVLTCESLQGVCALCYGTS
LATGDSVDLGEAIGIIAAQSIGEPGTQLTMRTFHTGGAASSAKKQTILKSIGGQKVRVER
LISYDITQGLNGVTDLLEARVGWRQQGKVAVMAFWPGTVDIVEVPTSGGAKKFDIYVRPN
GEAAEKAAEDLANQYSFSRTTSKTFKKLSPYTPITSVSNPDDLLVEKGEEVKAGDYLVDG
TPIPHEVLMVKGAREAAAEIIRGVQAIYGSQGVPLHDKHLEVIVRQMLGKVTVIDSGDTE
MLPGEIIDRNRFTAVNRKAVAEGKKPASARQEVMGMTRASLAAQSWLSAASFQETTRVLT
QAALDRREDPLVGLKENVIIGKLIPAGTGLGVYRNITVEATEEAKAEKYPNRIWSEPVQS
SDFSDEFSPADLSFTSIESYSDEV
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagaaaacttcgacgctcttcgagttggtctagccacctcagacgacatccgc
tcttggtcaaacggtgaagtaaagaagcctgagaccatcaactaccgcaccctaaagcct
gagaaggacggtcttttctgtgaaaagatctttggtcctaccaaggactgggaatgttca
tgtggaaagtacaagcgcgtacgtttcaagggcattgtttgtgagcgctgtggtgttgag
gtaaccaagtcttcagttcgtcgtgagcgcatgggtcacattgaacttgctgctccggta
actcacatctggtacttcaagggtgttccttcacgtcttggctacttgctagctatggcg
ccaaaggaccttgagaagatcatttactttgctgcctaccgcgtaatgggcatccactca
gaggaccgcacacttgatgctgctctgatcaaggatgactacattcaccgcatgcagact
ctttggaactcacgtcttgaagagatgctttctgttgcacagggcgagtacgaccagcta
accgctttgggtcttgctcttgagcctgcaatcaaactatgggaagcaccgatctgggtt
gacgcgcaattcgctaagtcaatcgagcagctaattcttgccgaagaaaagaaccctgag
ggtttctggggcaagaaggcaactgccgctgcagaagaagctgctgatgaagaaaactca
ccagtagttcgcactcctgcagaagagaagcagatcaaggctcttctttctgagttcaag
aagaagacagacaagatcgttaaggaatacgctcgcatcgagcgcccagcgaacctgcag
aaagagcagttggcttggcgtttgttcctgactctaaagccaggcgacctaatccagaac
gacgttatcttcgatcacttcgactactcattcggtgaatacttcgataccgctatcggt
gcagaagcagttcagcgcgtgcttgcagaattcgatcttgatgcagctgctgcggaactt
cgcgaagcaattgcaactaccaagggaaccaagcagactcaggcgattaagcgtctaaag
gttgttcagtcattcattggctcatcaaccccaccgacctcaatggttcttgatgtgctt
ccagttcttccaccggaaatccgcccgatggttcagcttgatggtggacgttttgcgacc
tctgacctaaacgacctttaccgtcgtgtgatcaaccgcaacaaccgtctaaagcgattc
attgatctaggcgcagttccaaagacaattcttaacaacgaaaagcgcatgcttcaggaa
gctgttgatgcgttgttcgacaacggtcgtcgcggtcgtgcagttaccggtaccggtaac
cgtgcgctgaagtcactgtctgacctactaaagggtaagcagggtcgtttccgtcagaac
cttctaggtaagcgcgttgactactcaggtcgttcagtaatcgttgttggtcctcagcta
aagctgcaccagtgtggtctgccaaagttgatggcgctagagctattcaagccgttcgtt
atgaagcgtcttgttgatctgggtcttgctcagaacatcaagagcgcaaagcgcatggtt
gagcgttcacgtccacaggtttggggagtacttgaagaagtaatccgcgagcgtccagtt
cttctgaaccgtgcgccgaccctacaccgattgggtatccaggctttcgaacctctacta
gtagaaggtaaggcaatccagcttcacccacttgtttgtgctgcgttcaacgcggacttc
gatggtgaccagatggccgtgcaccttccgctatcagttgaggctcaggccgaagctcgt
atcttgatgcttgcctcgaacaacatcttgaagccatctgatggtcgtccagttgctgtt
ccaacccaggacatgattattggtctgttccacatgaccactcttgttgagggtgcagtc
ggagaaggaaacctttacggttcaatctctgaggcaatcatggcttacgacgcaaaggca
cttgacctacaggccaaggcacgcattcgtctaaccaacgctggcgagacaaagatttac
gagaccactcttggtcgcgctttgttcaaccaggcacttcctgatgactatgactactac
gaaggtcaggttggcaagaaggaaattggaaagatcgttgccgagctagtagagaagttc
tcacgtgttgaggttgctcagtcacttgaccgcatcaaggatgccggtttccactgggca
actcgttcgggtgtatcgatgtcaattgcagatgcaaactttgactcatcaggtgcgttc
gacaaggctcgctcaaagatgatcatcgatggtgaaaaagaacacaccaagattcaggaa
gcgttcgacaacggtctgaagtcagaccttgagcgtcgtgacgaacttggagctttgtgg
ttcaagcgcaccaacgagattcagaacttgcttcaggagtcaatcccagcagacaacgcc
atcttcaagatggtaacttctggtgctcgtggtaactggctacagattcgttcgatcatc
ggtatgcgtggccctgtggctacatcatctggtgacttcgcaccgatgcctgtaaaggga
aactacctagttggtctaaccgctaacgagtacttcattaacgcaaccggtgctcgtaag
ggtaacgcggataccgcgatgaagactgctgccgcgggatacctaactcgtcgtctagtt
gacgtggctcaggacgttatcgttcgcgaaccagactgtggaactaacaagggtctagag
aagtctctaaaggacatcgatggcaactgggatgagcagactattgagctgtcagttcta
caccgtgcacttcagtcagacgtaaaggttggctctgatgtaatcgcaaaggctggtcag
actgttgaccagaagattgttgatgcattcaaggcagcaaacgttgacactgttggcgtt
cgctcagtacttacttgtgagtcgctgcagggtgtttgtgcactttgctacggaacctca
cttgcaaccggtgactcagttgatctaggtgaagcgatcggtattatcgctgctcagtca
attggtgagccaggtactcagctaacaatgcgtactttccacaccggtggtgctgcgtct
tctgcgaagaagcagacaatccttaagtcaatcggtggtcagaaggttcgtgttgagcgt
ctgatttcctacgacatcacccagggtctaaacggtgtaaccgacttgctagaagctcgt
gttggttggcgtcagcagggcaaggttgccgttatggcattctggcctggaacagttgac
atcgttgaggtaccaacctcaggaggagctaagaagttcgacatctacgttcgtccgaac
ggtgaagctgcagagaaggctgctgaagacctggctaaccagtactctttcagccgcaca
acctctaagaccttcaagaagttgagcccttacacaccgatcacctcagtttctaaccca
gacgacctattggttgaaaagggtgaagaagttaaggccggagactacctagttgacgga
accccaatcccacacgaagttctaatggttaagggtgctcgtgaagcagcagccgagatc
atccgtggtgttcaggccatctatggctcacagggtgttccactgcacgacaagcacctt
gaggttattgttcgtcagatgctgggcaaggttaccgttattgattcaggtgacacagag
atgcttcctggtgaaatcatcgaccgcaaccgctttaccgctgtcaaccgcaaggctgtg
gcagagggcaagaagccggcttcagctcgtcaggaagtaatgggtatgacccgtgcctca
ttggcagctcagtcatggctatcggctgcatcgttccaggaaacaacccgtgttctaact
caggctgctctagatcgtcgcgaagaccctctagttggcctaaaggagaacgtcatcatc
ggtaagttgatcccagccggtaccggtctgggtgtttaccgaaacatcacagttgaggcc
actgaagaggccaaggctgagaagtacccaaaccgtatctggtctgagcctgtgcagtct
tcggacttctcagatgagttcagcccagcggatttgagctttacctcaatcgagtcttac
tcggacgaggtctaa
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