Rhodomicrobium lacus: QMO75_02130
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Entry
QMO75_02130 CDS
T09241
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
rlac
Rhodomicrobium lacus
Pathway
rlac02020
Two-component system
rlac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rlac00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
QMO75_02130 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QMO75_02130 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rlac03021
]
QMO75_02130 (rpoN)
Transcription machinery [BR:
rlac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QMO75_02130 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_3
HTH_Crp_2
HTH_23
Arg_repressor
MarR
Motif
Other DBs
NCBI-ProteinID:
WKW51313
LinkDB
All DBs
Position
478279..479784
Genome browser
AA seq
501 aa
AA seq
DB search
MLQLRLEQRQTQKIVITPQLRQAIKLLQFSAIELQSYIENEIRDNPLLAAEERADGEAPP
PNGDAASGSDADVPAFDARDAAPAVEAVAETDWEPETPGDRAYEGAPSAASPEAEWLSTS
GKTGSPSEDYDPFATLSQAESLTDHLNEQAQLAFPDPQDRFIARYLIDLVDADGYIRSPL
EDAAELLSLPLDDIERVLGVLQTFDPVGVCARDLAECLAIQLREKDRCDPYMERLLANLD
LIAACDMHKLRRVCGVDADDLREMLQELRALNPKPGAAFEHAEIETLVPDVIVRRGPDGE
WRAELNPSAAPSLAVDRAYYASLKNRCRSDSERNYLSDRLSSANWLVKSLEQRLSTILKV
ATAMVEEQSAFFDHGVRHLKPLNLRQIAAKIGMHESTVSRVTSNKAIQTPRGIFEMKYFF
TSAIASASASSEAHSSEAVRDRIKELILNESPEEILSDDRIVTMLKADGIDIARRTVAKY
RDALRIPSSAARRRLKRANAA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
gtgctccaactaaggcttgagcaacggcaaacccagaaaattgttataacgcctcagctt
cggcaggcgatcaagcttctgcaattctcagccatcgaacttcaatcctatatcgaaaac
gagatccgcgataatcctctgctcgccgccgaggagcgcgcggatggagaagcgccgccg
ccgaacggtgatgccgcgtccggctcggatgcggatgttccggccttcgatgcccgcgat
gccgcccccgccgtcgaagccgtggccgaaaccgactgggagccggaaacccccggcgat
cgcgcctatgagggtgccccgtccgccgcttcaccggaggcggaatggctttcgaccagc
gggaagaccggttctccgagcgaggattacgatcccttcgccacgctctcccaggcggag
tcgctcaccgatcatctgaatgaacaggcccaactcgcatttcctgacccgcaggatcgg
ttcatcgcccgctacctcatcgaccttgtcgatgcagacggctatatccgctctccgctc
gaagacgcggccgagcttctttcgctgccgctcgatgatatcgagcgggtgctgggtgtg
ctgcaaaccttcgatccggttggcgtgtgcgcgcgcgatctcgcggagtgcctcgccatc
cagctccgcgagaaggatcgctgcgatccctacatggagcggcttctcgctaatctcgat
ctcattgccgcctgcgacatgcacaagctcaggcgcgtctgcggcgtcgacgcggacgac
ctgcgtgagatgctgcaggagctgcgcgcgctgaatcccaagcccggcgcggctttcgag
catgccgagatcgagaccctggtgccggacgtcatcgtgcggcgcggccccgatggcgaa
tggcgggccgaactgaacccgtcggcggcgccgtcgctcgccgtcgaccgtgcctattat
gcaagcctcaagaaccgatgtcggtccgacagcgagcgcaactacctctcagaccgtctt
tcttccgcgaactggctcgtaaagagcctcgaacagaggctttcgaccatcctcaaggtc
gccacggcgatggtggaggagcagtctgcattcttcgatcacggcgtgcggcatctgaag
ccgctcaacctgcgccagatcgcggcgaagatcggcatgcacgaatcgaccgtgagccgc
gtcacgtccaacaaggcgatccagacgccgcgcggcatcttcgagatgaagtatttcttc
acgtcggccatcgcctcggcgagcgcgtcgagcgaggctcattcctcggaagcggttcgc
gaccgcatcaaggaactcatcctgaacgagtcgcccgaggagatcctctccgatgaccgg
atcgtgaccatgctcaaggccgacggcatcgacattgcgcgccgtacggtggcaaaatac
cgcgatgcgttgcgcattccttcgtcggctgcgcgccggaggctgaagcgcgcgaacgcg
gcgtaa
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integrated database retrieval system
