Rhodomicrobium lacus: QMO75_03665
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Entry
QMO75_03665 CDS
T09241
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rlac
Rhodomicrobium lacus
Pathway
rlac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rlac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QMO75_03665 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlac03400
]
QMO75_03665 (mfd)
Enzymes [BR:
rlac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QMO75_03665 (mfd)
DNA repair and recombination proteins [BR:
rlac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QMO75_03665 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_16
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WKW51591
LinkDB
All DBs
Position
850091..853840
Genome browser
AA seq
1249 aa
AA seq
DB search
MAGETETLDKKAAGKPTALDRLAGGDGAILASGVPEGHDAFLIAAIARRLPTDTAYQQAV
LHVARDDHRLAALKSQLEFFAPGADVLSFPAWDCVPYDRVSPDSDIEARRIATLARLAHA
KGGKPAIIVLTTVNAALQRVPPLAAMKKSAARLAAGGRVSMEQVIARLEGSGFMRTGTVM
EPGEYAVRGGILDLYVPGHARPARLDFFGDTLETIRTFDPVTQRTQATRDGVTLLPISEI
PSGDAAVKQFRQRYVELFGPSKGDDALYEAVSAGTRYPGVEHWLPLFYDGMDTLFDYLPN
AVATLDHLADDAALRRLETIADHYEARREGLEQRSFGAPPYKPLKPDALYLTSEEWTAKL
GEHKVRRFEPFPQPDARAVVQIDFRGKQGRSFALERAESSDKLIPAVAEHIRTMQSLGKR
AVVACWTNGARERLGNMLSSHVSRIEKVANIAEVRKADKSAVSFALLGLESGYETPDLAI
IAEQDILGDRLIRRRKAKKASDVLVEASSLTPGDLMVHADHGIGRFIGLKTIDAAGAPHD
CVELEYAGGDKLFLPIENMELLTRYGSDEGDGQLDKLGGASWQGRKARLKKRIREMAEEL
IKVAALREMKPAPVLQVSDGAYNEFVTRFPYEETDDQLASIEAVADDLAKGRPMDRLVCG
DVGFGKTEVALRAAFIAVMEGKQVAVVVPTTLLARQHYQTFVNRFQGFPVKIAQASRLVT
PKEMALTREGLKAGQIDIVVGTHALLAKSIAFKDLGLLIVDEEQHFGVAHKERLKNLREE
VHVLTLTATPIPRTLQLALTGVREMSVIATPPVDRLAVRTFITPFDPVTLREALLRERYR
GGQCFYVVPRISDLDDVAAFLREHVPEIRFRQAHGQMAPTQLEDIMSAFYDKEFDVLLST
TIVESGLDIPNANTLIVHRADMFGLAALYQLRGRVGRSKTRAYAMFTIPPNGKITPQAEK
RLKVLHSLDSLGAGFTLASHDLDLRGAGNLLGEEQSGHIKEVGYELYQSMLEEAVAALKA
NGGEEREEEEQWSPTINVGLPVLLPEAYVPDLQVRLGLYRRLSGLHESADLENFSAELAD
RFGPPPDEVKHLLTVVQIKNYCRKAGIAQVDAGPKGAVITFRNKKFANPQGLVKFMYEHG
VQVKLQIDQKLVYKEEWDDGVERLRGARALVRELAAVAKGEAEGASGVAAGEGKAIHEMR
LALPKKPATPPPAKHQHKPGAGAAQFRHAAAGKGVPPKPPSKGGKPRYN
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcgaaaccgaaacattggacaagaaggcggcgggaaagcccaccgcgctcgac
aggcttgcgggcggagatggcgctatcctcgcctccggcgtgcccgagggccacgacgcg
tttctgatcgcggccatagcgcggcgcctccccaccgacacggcgtaccagcaagcggtg
ctgcacgtcgcgcgcgacgaccaccgtcttgccgcgctcaagagccagctcgaattcttt
gcccccggcgcggacgtgctctcgtttccggcgtgggactgcgtgccctacgatcgcgtt
tcgcccgacagcgacatcgaagcccgacgcatcgccacgctcgcaaggctcgcccatgcg
aagggcggcaagcccgcgatcatcgtgctgacaacggtcaacgccgcgcttcagcgcgtg
ccgccgctcgccgcgatgaaaaaatcggcggcgcggctcgcggcgggtgggcgcgtctcc
atggagcaggtgatcgcgcggctcgaaggatcgggcttcatgcgcaccggcaccgtgatg
gagcccggtgaatacgccgtgcgcggcggcatcctcgatctctacgtgccggggcatgcg
cggcccgcgcgcctcgacttcttcggcgatacgctggaaacgatccgcaccttcgatccc
gtcacgcagcgcacgcaggccacgcgcgatggcgtcacgctgcttccgatcagcgaaatc
ccctcgggggacgccgccgtcaagcaatttcgccagcgttacgtcgagctgttcgggccg
agcaaaggcgacgacgcgctttacgaggcggtgtcggcgggcacgcgttatcccggcgtc
gagcactggctgccgctgttctacgacggcatggacacgctgttcgattatctgccgaac
gcggtcgcaacgctcgatcatctggcggacgacgcggcgctgcgccgcctcgaaaccatc
gccgatcattatgaagcgcgccgcgaggggctcgaacaacgctccttcggcgcgccgccc
tacaagccgctcaagcccgacgccctctacctcacgtcggaggaatggacagcgaagctt
ggcgagcacaaggtgcgccgcttcgagccgttcccgcagccggacgccagggcggtcgtg
cagatcgacttcaggggcaagcaggggcgcagcttcgcgctcgaacgcgctgaaagctcc
gacaagctcattccggccgtcgccgagcatatccgcacgatgcaaagcctcggcaagcgc
gcggtcgtcgcctgctggacgaacggcgcgcgcgaacgcctcggcaacatgctctcgtcg
catgtctcgcgtatcgaaaaggttgcaaacatcgcggaggtgcggaaggcggacaagagc
gcggtcagcttcgcgctgcttggcctcgagtcgggctacgagacgcccgacctcgcgatc
atcgccgaacaggatatcctaggcgaccgcctcatccgtcgccgcaaggcgaagaaggcg
agcgatgtgctcgtcgaggcgtcgagcctcacgccgggcgacctcatggtgcatgccgat
cacggcatagggcggttcatcgggctgaagaccatcgacgcggcgggcgccccgcacgat
tgcgtcgaactcgaatatgcgggcggcgacaagctgttcctgcccatcgagaatatggaa
ctccttacgcgctacggctcggacgagggcgacggccaactcgacaagctcgggggcgcg
tcctggcagggccggaaagcgcggctcaagaagcgcatccgcgagatggcggaagaactc
atcaaggtcgcggctctgcgcgaaatgaagcccgcgccggtgcttcaggtttcggacggc
gcctataatgaattcgtcacccgcttcccttacgaggagaccgacgatcagctcgccagc
atcgaggcggtggcggacgatctcgccaagggccgtccgatggatcgcctcgtgtgcggc
gatgtcggcttcggcaagaccgaagtcgcgctccgcgcggccttcatcgcggtgatggag
ggcaagcaggtggcggtcgtcgtgccgacgacgctgctcgcgcgccagcattaccagacc
ttcgtcaatcgcttccagggcttccccgtcaagatcgcgcaggcttcgaggctcgtgacg
ccgaaggagatggcgctgacgagagaagggctgaaggccgggcagatcgatatcgtggtc
ggcacgcatgcgctcctcgccaaatccatagccttcaaggatctgggcctcctcatcgtc
gacgaggagcagcatttcggcgtggcgcacaaggaacggctgaagaacctgcgcgaggaa
gtgcacgtgctgacgctcacggcgacgccgatcccgcgcacgctgcaactcgcgctgacg
ggcgtgcgcgaaatgtcggtgatcgcgacgccgccggtggaccgcctcgcggtgcgcacc
ttcatcacgccgttcgatcccgtcacgctgcgcgaggcgctgcttcgcgagcgctatcgt
ggcggccagtgcttctatgtggtgccgcgcatttccgatctcgacgatgtggcggcgttc
ctgcgcgaacacgtgccggaaatccgcttccgtcaggcgcacggccagatggcaccgacc
cagctcgaagacatcatgtcggccttctacgacaaggaattcgacgtgctgctgtccacg
accatcgtggaatcgggcctcgatattccgaacgcgaacacgctgatcgtgcatcgcgcg
gacatgttcggcctcgccgcgctctatcagcttcgcgggcgtgtcggccgctccaagacg
cgcgcctatgccatgtttaccatcccgccgaacggcaagatcacgccgcaggccgaaaag
cggctcaaggtgctgcactcgctcgacagcctcggcgccggtttcacgctggcgagccac
gacctcgacctgcgcggcgcgggcaacctgctcggcgaagagcagtccggccacataaag
gaagtcggctacgagctttatcagtccatgctggaagaggcggtcgccgcgcttaaggcc
aacggcggcgaggagcgcgaggaagaggagcaatggtcgccgacgatcaatgtcggcctg
cccgtgttgctgccggaagcctacgtgcccgatcttcaggtgcggctcggcctttatcgt
cgcctctcggggctgcatgagagcgccgacctcgaaaacttctcggcagagctggcagac
cgtttcgggccgccacccgatgaagtgaagcacctcctcaccgtggttcagatcaagaat
tactgccgcaaggctggcatcgcgcaggtcgacgccggaccgaagggcgcggtaatcacc
ttccgcaacaagaaattcgcgaacccgcaaggacttgtgaagttcatgtacgagcacggc
gtgcaggtgaaactgcagatcgatcagaagctcgtctacaaggaggagtgggacgacggc
gttgagcggctgcgcggtgcgcgggcgctcgtgcgcgagcttgcggctgtcgcgaagggc
gaggcggaaggcgcatcaggagtggcggcaggcgagggcaaagccatccacgagatgcgc
ctcgcgctgccgaaaaagcccgcgacgccgccgcctgcgaagcatcagcacaaacccggc
gcgggcgcggcacagttccggcacgccgcagcggggaagggcgtgccgccgaagcctccg
tccaagggtggcaagccccgctataattag
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