Rhodomicrobium lacus: QMO75_11315
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Entry
QMO75_11315 CDS
T09241
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rlac
Rhodomicrobium lacus
Pathway
rlac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QMO75_11315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlac03019
]
QMO75_11315
03009 Ribosome biogenesis [BR:
rlac03009
]
QMO75_11315
Enzymes [BR:
rlac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QMO75_11315
Messenger RNA biogenesis [BR:
rlac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QMO75_11315
Ribosome biogenesis [BR:
rlac03009
]
Prokaryotic type
rRNA processing factors
QMO75_11315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
WKW49884
LinkDB
All DBs
Position
complement(2516123..2519251)
Genome browser
AA seq
1042 aa
AA seq
DB search
MANKMLIDATHPEETRVVVTRGNRVEEFDYESASRKQLRGNIYLAKVARIEPSLQAAFVN
YGGNRHGFLAFAEIHPDYYQIPVAVREQLMKEEAADRQGRYRDAGESRPDRQSSDRKPEA
ENGLQAFAEAESGDSQPDAAAAVEASDEDVRVEFAAAVDAAPETAPVEQADGGARASEPE
ENGGDESGNGGAIALDAVLPPTLYEEFTAAIARGEEARDEIPSHPDDVEGAADSEDDEAD
GDEPEDDESDDADDDGTDDAEDADDEQPKAKHRSANDDSGDDDSGSSSDDGGIISVPESA
TPAPVEVVGSEDALEELPQRHKRRWRHYKIQEVIKRNQIVLIQVVKEERGSKGAALTTYL
SLAGRYTVLMPNTASGGGISRKITVPADRKRLKEIAQELEVPEGMGLIIRTAGASRTKAE
IKRDFEYLLRLWENVRDLTLRSTAPCLVYEEGDLIKRSIRDLYNKDIDEILVAGDAAHRE
AREFMRMLMPSHAKNVLLYKEPEPIFTKYEVERQLNQMFSPVVTLKSGGYIVLNQTEALV
AIDVNSGRSTREYSIEDTALKTNLEAAEEVARQVRLRDLAGLIVIDFIDMDERRNNRSVE
RRLKESLRHDRARIQVGHISHFGLLEMSRQRLRQGVVEVSTVPCPVCQGVGHIRSTESVA
LMILRSIEDHLRTQGPANITLTASTEAALYILNNKRSYLRDIELRYGVTIVLQPDDKAHG
AHFVLERGAEAVPPVVGDTRVIHMETASLAQADDDEEAVAVPSASAPAAEGEGEKRSSRR
KRRRRRGRGESASDESLPNGHAVAQSNGSDDDDEDDDDTDSGVTEAGAQAVAAVNGEDIR
ESAEGRQEGQFRRNRRRGRRGGRRHREDFAGQPGEIPGLGEQPEIDFEHGLPVGQSGAVE
PVTAETVAEAAPEPDQSTVAESAEAPAKVEIEPQPVEGVSGDDRATAGEAPVEPEPVAEV
SSVQPAVEAEAKPEPTTDAAAPQTPKADEAEAAQAKSDEAPAAEQAKPEAEIAILPPPAP
EPKPKPVRTGPPKKGWWQRSVS
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaagatgttaatcgatgccacccacccggaagagacacgggtggtggtgacg
cgcggcaatcgcgtcgaggaatttgactacgagtcggcgtcgcggaagcagcttcgaggc
aacatctatctggccaaggttgcccgtatcgagccttcgcttcaagcggccttcgtgaac
tacggcggcaatcgccacggctttctcgcctttgcggaaatccatccggattattatcag
atcccggtcgctgttcgcgaacagctcatgaaagaagaggccgcggatcggcaggggcgt
taccgcgacgcgggcgaaagccgtccggatcgccaatcctctgacaggaagccggaggcc
gaaaacggcttgcaggctttcgccgaagccgaaagcggcgacagccagcccgatgcggcg
gcggctgtcgaagcttcggatgaagacgttcgcgtggaatttgcagcggcggtcgatgcc
gcgcctgaaacggcgccggtcgaacaggccgacggcggtgcgcgcgcgtccgagcccgaa
gaaaacggtggcgacgaatccggaaatggcggggcgatcgcgctcgatgccgtgcttccg
cccacgctgtacgaagagttcacggccgccatcgcgcggggcgaggaggcgcgcgacgaa
attccgagccatccggacgatgtggaaggcgctgccgattccgaagatgacgaggctgac
ggcgacgagccggaggacgacgaatcggacgacgccgacgacgatggcacggacgacgcc
gaggacgccgacgacgaacagccgaaggcgaaacaccgctctgccaatgacgattccggc
gacgatgacagcggctcgtcttcggacgacggcggcatcatctccgtgccggaaagtgcg
acgcccgcgccggtcgaggttgtcggctccgaagatgcgctcgaagaactgccgcagcgt
cacaagcgccggtggcgtcactacaagattcaggaagtcatcaagcgcaaccagatcgtt
ctgatccaggtcgtgaaggaagagcgcggctcgaagggcgcggcgctgaccacctacctg
tcgctcgcgggccgctataccgtgctcatgccgaacacggccagcggcggcggcatttcg
cgcaagatcaccgtcccggccgaccgcaagcgtctgaaggaaatcgcgcaggaactcgaa
gtgccggaaggcatggggctcatcatccgcacggccggtgcctcgcggaccaaggccgaa
atcaagcgcgacttcgaatatctgctgcgcctgtgggagaacgtccgcgacctcacgctg
aggagcaccgcgccttgcctcgtttacgaggaaggcgacctcatcaagcgctcgatccgc
gatctctacaacaaggacatcgacgaaattctcgtggcgggcgatgccgctcaccgcgag
gcgcgcgaattcatgcgcatgctcatgccgagccatgcgaaaaacgtgctgctttacaag
gaacccgagccgatcttcaccaagtatgaggtcgagcgtcagttgaaccagatgttcagc
ccggtggtcacgctgaagtccggcggctatatcgtgctgaaccagaccgaagcgctcgtc
gccatcgacgtgaactccggccggtcgacgcgcgaatactccatcgaagacacggcgctg
aagacgaacctcgaagccgccgaggaagtcgctcgccaggtgcgcctgcgcgatctcgcg
ggcctcatcgtcatcgacttcatcgacatggacgagcggcgcaacaaccgctccgtcgaa
cgcaggctgaaggaaagcctgcgtcacgaccgcgcccgcattcaggtcggccacatcagc
catttcggccttctggaaatgtcgcgccagcggctgcgccaaggcgtcgtcgaagtgtcg
acagtgccgtgcccggtctgccagggcgtcggccatatccgttcgaccgagtccgttgcg
ctgatgatcctgcgttcgatcgaggatcacctgcggacgcagggcccggccaacatcacc
ttgaccgcgtcgaccgaagccgcgctctacatcctcaacaacaagcgctcctacctccgc
gatatcgaacttcgctacggcgtgacgatcgtccttcagccggacgacaaggcgcatggc
gcgcatttcgtgctcgaacgtggggccgaagccgtgccgccggtcgtgggcgacacgcgc
gtcattcacatggaaaccgcctcgctcgcgcaggcggacgatgatgaggaagcggtggcg
gtgccgtcggcctcggctcccgcggctgaaggcgaaggcgagaagcgctcctcccgacgc
aagcgccgccgtcggcgcggccggggagagtccgcctctgatgaatcgcttccgaacggc
catgccgtcgcgcagtccaatggctccgacgacgacgatgaagatgacgacgatacggac
agcggcgtgactgaagcaggggcgcaagccgttgccgctgtcaatggcgaggatatccgg
gaaagcgccgaaggacgtcaggaaggccagttccgccgcaatcggcgccgaggccgtcgc
ggtggccggcgtcaccgtgaggacttcgccggtcagcccggcgagatccccggacttggc
gagcagcccgaaatcgacttcgagcacgggctccccgttgggcaatcgggagcggtggag
cccgttacggcggagaccgtcgccgaagccgcgccggagccggatcaatccaccgtagcc
gagtccgccgaagcccccgcaaaggttgaaatcgagccgcagccggttgagggcgtctcc
ggtgacgaccgcgcgaccgctggcgaggccccggtcgaaccggagcccgtggccgaggtt
tcgagcgttcagcctgccgtcgaagcagaagcgaagcccgagccgaccacggacgctgcc
gcgcctcagacgccgaaagcagacgaggccgaagccgcgcaggcgaaatcggacgaagcc
ccggccgcggagcaggcgaagcccgaggccgagatcgccatccttccgccgcccgcaccg
gaacccaagccgaagcccgtgcgcactggcccgccgaaaaaaggctggtggcagcgcagc
gtaagctga
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