Rhodomicrobium lacus: QMO75_11955
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Entry
QMO75_11955 CDS
T09241
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rlac
Rhodomicrobium lacus
Pathway
rlac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QMO75_11955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlac03019
]
QMO75_11955
Enzymes [BR:
rlac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QMO75_11955
Messenger RNA biogenesis [BR:
rlac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QMO75_11955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
SMC_N
Utp25_C
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
WKW50000
LinkDB
All DBs
Position
2670710..2671945
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AA seq
411 aa
AA seq
DB search
MTSVTFEALGLASPLLRALADENYVQPTPIQEKAIPHLLQGRDVLGLAQTGTGKTAAFAL
PILQLLAERQDNPKPKTARALVLVPTRELGLQIAESFKAYSRHLKLTSTVIMGGVAIGPQ
IRALSRGVDFLVATPGRLLDHLSQGTVDLGQTAFFVMDEADMMLDMGFIRDVRKLMKAMP
RKRQSIMFSATMPKEIATLAAEILKDPVRVTIPAKTVAVERIDQRVHLVSSGNKPNMLAG
LLDQPEFDRVIVFTRTKRSANRVAERLAQGGIATEAIHGNKSQAARQKALENLRIGKARV
LVATDILARGIDVDSISHVINYELPNDPENYVHRIGRTARAGTDGIAISFCDMSERSSLR
NIERFLGRTLPQVTDTPVIAATTANVIAAQPRPSRTRKYRPTRSSSRSASR
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
gtgacttctgtgaccttcgaagccttagggcttgcaagccccctgttgcgcgcgctcgct
gacgaaaactacgttcagccgacgccgattcaggaaaaggctatcccccatcttctgcag
ggccgtgacgtgctcggcctcgcccaaaccggcaccggcaagaccgccgcattcgcgctg
cccatcctgcaacttctcgcggaacggcaggacaaccccaaaccgaaaaccgcgcgagcg
ctcgtcctcgttccgacacgcgaactggggctgcaaatcgccgagagcttcaaggcttac
agccggcacctgaaactgacgagcaccgtcatcatgggcggcgtcgcgatcggcccgcag
ataagggcgttgagccggggcgtggatttccttgtggcaacgccggggcgcctgctggat
cacttgtcccaaggcaccgtcgacctcgggcagacagccttcttcgtgatggacgaagcg
gacatgatgctcgacatgggcttcattcgcgacgttcgcaagctcatgaaggccatgcca
cggaaaaggcaatcgatcatgttctcggccacgatgcccaaggaaatagcgacgctggcc
gcagaaatcctgaaagaccccgtccgggtcaccattccggcgaaaacggtcgccgtcgaa
cgaatcgatcagcgcgttcacctcgtctcatcgggcaacaagcccaacatgctcgccgga
ctgctggatcagccggagttcgaccgggtcatcgtcttcacgcgaaccaagcgctccgcc
aaccgtgtcgcggaacgtctcgcgcaggggggaatcgccacagaggccattcacggaaac
aagagccaggccgcgcggcagaaggcgcttgaaaatcttcggatagggaaagcgcgcgtg
ctcgtcgcgaccgatattctggcgcgcgggatcgatgtggacagcatcagccacgtcatc
aattacgaattgccgaacgacccggagaactacgttcatcggattggccgaacggcgcgc
gcagggaccgacggcatcgcgatctccttctgcgacatgagtgaacggagcagcctgcgc
aacatcgaacgcttcctcgggcgcacgctgccccaggtgaccgatacaccggttatcgcc
gcgaccacggcgaacgtgatcgccgcgcaaccgaggccgtcgaggactcgcaaataccgc
ccgacacgatcctcctccagatcggcgtcccgctga
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