Rhodomicrobium lacus: QMO75_12565
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Entry
QMO75_12565 CDS
T09241
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rlac
Rhodomicrobium lacus
Pathway
rlac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rlac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QMO75_12565 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rlac03021
]
QMO75_12565 (rpoC)
03400 DNA repair and recombination proteins [BR:
rlac03400
]
QMO75_12565 (rpoC)
Enzymes [BR:
rlac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QMO75_12565 (rpoC)
Transcription machinery [BR:
rlac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QMO75_12565 (rpoC)
DNA repair and recombination proteins [BR:
rlac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QMO75_12565 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WKW50114
LinkDB
All DBs
Position
2809289..2813515
Genome browser
AA seq
1408 aa
AA seq
DB search
MNQEITNLFSPQVPTQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKS
LPSRIGLLLDMGLKDLERVLYFENYVVIEPGLTPLKAGQLLTEEDFNKAQEEYGEDAFQA
GIGAEAVRDMLMALNLEQMREQIRQEIAEATTELKPKKLAKRLKVIEAFIQSGNRPEWMI
MKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAQGYSATVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGGPIIVPSQDIVLGLYYLSILKEKEPGEGGIYGSVAEIQHALA
AGAVTLHAKIKGRHTGVDENGKPQTKVYDTTPGRLMLAEMLPKKPGISFDLVNRLLTKKN
IGKVIDAVYRSCGQKETVIFCDRIMALGFHHAYKAGISFGKDDMLVPETKKKIIGDTEAL
VLDYEQQYNDGLITQMEKYNKVVDAWAKCTDRIAKEMMDRISAVQYDKETGREKQINSVY
MMAHSGARGSEKQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTEHDCGTDRGIKLGAVIDAGEVLVSLGDRILGRV
PADDVVHPSTGAVIAPAGEIITEVEARLLDEAQVQEVRIRSALTCELKSGICGKCYGRDL
ARGTSVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVADNSFIESNFAGNVEIRNRN
AARDSQGRLVALGRNMAVVIKDDDGRERAVHKIAQGSHLKVDDGDVVKRGQRLAEWDPYS
RSILTETDGVVEFEDLLDGISVNEQSDETTGITNRVIVDWRANPRGSALRPAIVIKDKVG
GKILKLARGGEARYLLSVEAILSVEPGQKVKAGDVLSRISLESAKTRDITGGLPRVAELF
EARRPKDHAIIAEISGTVHFGRDYKNKRRVLIQPDEEGLDPVEYLLPKGKHLAVQEGDRI
EKGEFILDGNPAPHDILAIKGVEELASFLVNEIQEVYRLQGVTINDKHIEVIVRQMLQKV
EVTDAGDTEFLKNEQVDKIEFDEMNAMVEKAGGRPATAVPVLLGITKASLQTRSFISAAS
FQETTRVLTEAALNGKVDTLDGLKENVIVGRLIPAGTGGMISQLRRVASHRDDLILQERN
KASAKALPVAQDGESVAPGVPREVQVVE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagagatcacgaatctcttcagcccgcaggtgccaactcaggtattcgaccag
attcgcatctcgatcgcaagtccggaaaaaatactgtcgtggtcttacggcgagatcaag
aagccggaaaccatcaactaccgcacgttcaagcccgaacgcgacggcctcttctgcgcg
cgcatcttcggcccgatcaaagactacgaatgtctttgcggcaagtacaagcgcatgaag
tacaaaggcgttatctgcgaaaaatgcggcgtggaagtgacgctcaccaaggtgcgccgc
gaccgcatgggccatatcgaactggcttcgccggtcgcgcatatctggtttctgaagtcg
ctgccctcgcgcatcggccttctgctcgacatgggcctgaaggatctcgaacgcgtgctc
tacttcgagaactacgtcgtcatcgagccggggttgacgccgctcaaggcgggccagctt
ctgaccgaggaagacttcaacaaggcgcaggaagagtacggcgaggacgcgttccaggcg
ggcatcggcgcggaagccgttcgcgacatgctcatggcgctgaatctcgagcagatgcgc
gagcagatccgccaggaaatcgcggaagccacgaccgaactcaagccgaagaagctcgcc
aagcggctcaaggtgatcgaggcgttcatccagtcgggcaaccggccggaatggatgatc
atgaaggtcatcccggtgatcccgccggaattgcgcccgctcgtgccgctcgacggcggc
cgcttcgcgacctcggacctgaacgacctctatcgtcgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgagcttcgcgcgccggatatcatcatccgcaatgagaagcgcatg
cttcaggaagcggtggatgcgctgttcgacaacggccgccgcgggcgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgctggccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgctcggtgatcgtggtgggc
ccggaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcggctcgatgcgcagggctattcggcgaccgtgaagcaggcgaag
aagctcgtggagaaggagcgtcccgaagtctgggatatcctcgacgaggtcattcgcgag
catccggtgttgctcaaccgcgcgccgacgcttcaccgtctgggcatccaggcgttcgag
ccggtgcttgtcgaaggcaaggcgatccagcttcacccgctcgtctgcgctgcgttcaat
gccgacttcgacggcgaccagatggccgtccacgtgccgctgtcgctcgaagcgcagctt
gaagcgcgcgtgctcatgatgtcgacgaacaacatcctgcacccggcgaacggcggcccg
atcatcgtgccttcgcaggacatcgtgctcggcctctactatctctcgatcctcaaggag
aaggagccgggcgagggcggcatctacggcagcgtcgccgaaatccagcatgcgctcgcc
gccggcgcggtgaccctgcacgccaagatcaagggccgccacaccggtgtcgatgaaaat
ggcaagccgcagacgaaggtctacgacaccacgcccggccgcctcatgctcgcggaaatg
ctgcccaagaagcccggcatcagcttcgacctcgtgaacaggctgctgacgaagaagaac
atcggcaaggtgatcgacgccgtctaccgttcctgcggacagaaagaaacggtcatcttc
tgcgaccggatcatggcgctcggcttccaccacgcgtacaaggccggcatttccttcggc
aaggacgacatgctcgttccggaaacgaagaagaagatcatcggcgacaccgaagccctc
gtgctcgactacgaacagcagtacaacgacggcctcatcacccagatggagaagtacaac
aaggtcgtcgacgcctgggcgaagtgtacggaccgcatcgcaaaggagatgatggaccgt
atctccgccgttcaatacgataaggaaaccggccgcgagaagcagatcaactcggtctac
atgatggctcactcgggcgcgcgtggttccgaaaagcagatgcgtcagcttgccggtatg
cgcggcctcatggccaagccgtcgggtgaaatcatcgagacgccgatcatctccaacttc
aaggaaggactgtcggttctcgaatacttcaactcgacccatggcgcgcgaaagggcctc
gcggacacggcgctcaagacggcgaactcgggttacctcacccgccgtctcgtcgacgtg
gcgcaggactgcatcgtgacggaacacgattgcggcaccgacagaggcatcaagctcgga
gcggtgatcgacgcgggcgaagtgctcgtgtcgctcggcgaccgcatcctcggccgcgtg
cccgcggacgacgtcgtgcatccgtcgacgggcgcggtcatcgctcccgccggtgagatc
attaccgaagtggaagcccggcttctcgatgaagcgcaggtgcaagaggtgcgcatccgc
tccgctctcacctgcgaactcaagagcggcatctgcggcaagtgctatggccgcgacctc
gctcgcggaacctcggtcaacatcggcgaagcggtcggcgtcattgcggcgcagtccatc
ggcgagccgggcacgcagctcaccatgcgcacgttccacatcggcggcacggctcaggtg
gccgacaattcgttcatcgagagcaacttcgcgggcaatgtggagatccgcaaccgcaac
gcggcgcgcgatagccagggacgtctggtggccctaggccgcaacatggccgtcgtcatc
aaggacgacgacggtcgcgagcgcgccgttcacaagatcgcgcagggctcgcacctgaag
gtggacgacggcgatgtcgtcaagcgtggccagcgtctggctgagtgggatccgtattcc
cgctcgatccttacggaaaccgatggcgtggtcgagtttgaagacctgctcgatggtatc
tcggtcaacgaacagtccgacgaaacgacgggtatcacgaaccgcgtcatcgtcgactgg
cgcgccaacccgcgcggctcggctctgcgcccggccatcgtgatcaaggacaaggtcggc
ggcaagatcctcaagctggcgcgcggcggcgaagcgcgttacctgctctccgtcgaagcg
atcctttccgtggagccggggcagaaggtgaaggcgggcgacgtgctgtcacgtatctcg
ctcgaaagcgccaagacgcgcgacatcacgggcggtctgccgcgtgtggccgagctgttc
gaggcgcggcgtccgaaggatcacgcgatcatcgcggaaatctccggcacggtgcatttc
gggcgcgattacaagaacaagcgccgcgtccttatccagccggatgaggaagggctcgat
ccggtcgaatacctgctgcctaagggcaagcacctcgcggtgcaggagggcgaccgcatc
gaaaagggcgagttcatcctcgacggcaacccggcgccgcacgacatcctggcgatcaag
ggcgtggaagagcttgcatcgttcctcgtcaacgaaatccaggaggtctaccgcctgcaa
ggcgtgacgatcaacgacaagcatatcgaagtgatcgtgcgccagatgcttcagaaggtg
gaagtgaccgacgcgggcgacaccgagttcctcaagaacgagcaggtcgacaagatcgag
ttcgacgagatgaacgcgatggtcgaaaaggcaggcggacgtccggcaacggcggttccg
gtgctcctcggcatcacgaaggccagcctgcagacgcggtcgttcatctcggcggcctcg
ttccaggagacgacgcgcgtcctcacggaagccgcgctcaacggcaaggtcgatacgctc
gacggcctgaaggaaaatgtcatcgtgggccgcctcatcccggcgggcacgggcggcatg
atcagccagcttcgccgtgtggcgagccaccgcgacgatcttattcttcaggagcggaac
aaggccagcgcaaaggcgcttcctgtcgcgcaggacggcgaatcagtcgccccgggtgtg
ccgcgcgaggttcaggtcgtcgaataa
DBGET
integrated database retrieval system
