Rhizobium leguminosarum bv. trifolii WSM1689: RLEG3_17400
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Entry
RLEG3_17400 CDS
T03009
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rlb
Rhizobium leguminosarum bv. trifolii WSM1689
Pathway
rlb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RLEG3_17400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlb03019
]
RLEG3_17400
03009 Ribosome biogenesis [BR:
rlb03009
]
RLEG3_17400
Enzymes [BR:
rlb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RLEG3_17400
Messenger RNA biogenesis [BR:
rlb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RLEG3_17400
Ribosome biogenesis [BR:
rlb03009
]
Prokaryotic type
rRNA processing factors
RLEG3_17400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHF83493
LinkDB
All DBs
Position
complement(1476745..1479618)
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AA seq
957 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSKQDQP
DVGIVPAEAPETAAVTEETAAVEAAASPEATEEAPAKKARPRRSRKKVVEPVAETTATED
AVPTDVEAEGASSVDNEDDGSTGGAMAAMVETDTISEDVDTSKRRHDDDDDDDDHGEEEV
IESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLA
GRYSVLMPNTARGGGISRKITNPADRKRLKEIARLLEVPQGMGVILRTAGANRTKVEVKR
DFEYLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKD
FMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSID
VNSGRSTREHSIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKL
KECLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHV
LRGIEEYLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYESRFGVAIIIDADGSVGAQHF
AIDRGEPVENPVKIETLFNFAAIPEDDDDDIVIEVDEEEDEELEEKPVVAERPVAARAEG
EADGNRKRKRRRRRRGRNGNAEQPLSAAGEAGDEDEDGDDEGGEGDENTEATPETHAESE
ESQRRKRRRRGKRGGRRNRAEDGSELAAGEAGEDNGSDEDEGDDVSNDGAPSEAVAVEAI
AEQADEGQTAMAAVESAPVITEEVKPARARGRRKPAASPVEEPVAETPPAVEAEPELVEA
SADLEMAVQEEAKPVRANRESNISSSEPTVKSTRVENGEGDDGKPKKAGWWQRRGFF
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgatgcgtctcacgaggaagagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagaatttgacttcgagtcccagcacaagaagcagatccgcggc
aacatttatcttgcaaaggtgacgagggtcgaaccctcgctgcaggccgccttcgtcgat
tacggcggcaaccggcacggcttcctggccttcgccgaaatccatcccgactattatcag
ataccgcttgccgaccgtcaggcactgcttcgggccgaagccgaggagcatcgccgcgac
gaagatgtcgagcatgtcgaaaccgcaccgatggtcgatctttccaaacaggatcagccg
gatgtcggcatcgttccggcagaggcgccggaaacggctgccgtaacggaagagaccgca
gcggtagaggccgcggcatcacccgaggccacggaggaagcgccggccaagaaggcaagg
ccgcgccgcagccgcaagaaggtggtagaaccggttgccgaaacgaccgcgaccgaggat
gctgttccgaccgacgtcgaagccgaaggcgcttcgagcgtcgacaatgaggatgacggt
tcgaccggcggcgcgatggctgcgatggtggaaaccgatacgatctccgaggacgtcgat
accagcaagcgtcgccacgatgatgacgacgacgatgacgatcacggcgaagaggaagtt
atcgaatccgtcggcgccgaagacgcgatggaagaagtgccggaccgcgtgcagcgcaag
ccgcgcaagcagtaccgcatccaggaagtcatcaagcgccgccagatcctgctcgtgcag
gtcgccaaggaagagcgcggcaacaagggtgcagcccttaccacctatctctcgctcgcc
ggccgctactcggttttgatgccgaacactgcgcgcggcggcggcatttcccgcaagatc
accaatcctgccgaccgcaagcgcctgaaggaaattgcgcgcctgcttgaggtgccgcag
ggcatgggcgtcatccttcgcaccgccggtgccaaccgcaccaaggtcgaggtcaagcgc
gatttcgaatatctgatgcgcctgtgggagaacgtgcgcacgctgacgctggcgtccacc
gctccctgcctcgtctatgaggaaggctcgctgatcaagcgttcgatccgtgacctctac
aacaaggatatcagcgaagtcatcgtctccggcgaagaaggctatcgtgaagcgaaagac
ttcatgaagatgctgatgccgagccatgccaaggtggttcagccctaccgcgacatccat
ccgatcttttcgcgttccggcatcgaggctcagctcgaccgcatgctgcagccgcaggtg
acgctgaagtccggcggctatttgatcatgaaccagaccgaagcgctggtctcgatcgac
gtcaactccggccgctcgacccgcgaacattcgatcgaagacaccgcgctgcagacgaat
ctcgaggctgcagacgaagtcgcccgccagcttcgccttcgcgaccttgccggcctgatc
gtcatcgacttcatcgacatggaagagaagcgcaacaaccgcgccgtcgagaagaagctg
aaggaatgcctgaagaacgaccgcgcccgcatccaggtcggccgaatctcgcatttcggc
ctgctggaaatgtcgcgccagcgcatccgcgcttcggttctcgaatcgacgacgcaagtc
tgctcgcattgcggcggcagcggccatgtgcgttcgcagtcctccgtcgcgctgcacgtc
ctgcgcggcatcgaagaatatctgctgaagaacaccacgcacaacatcaccgtgcgcacc
acgcctgacatcgcgctctacctcctcaaccacaagcgccagacgatcgtcgattatgag
agccgcttcggcgtcgcgatcatcatcgatgcggacggctcggtcggtgcgcaacatttc
gcgatcgatcgcggcgaaccggtggaaaacccggtcaagatcgaaaccctcttcaacttc
gcagccattcccgaggatgacgacgacgatatcgtcatcgaagtggatgaggaggaagac
gaggaactcgaggaaaagccggttgttgccgagcggcccgtcgcggcccgcgctgaaggc
gaagctgacggcaaccgcaagcgaaagcgccgcaggcgccgccgcggccgcaacggcaat
gccgagcagccgctatcggcggcaggcgaagccggcgacgaggatgaggacggcgatgac
gagggcggcgaaggtgatgaaaacaccgaggccacgcccgagacacacgctgaaagcgaa
gaatcgcagcgccgcaaacggcgccgtcgcggcaagcgtggcggccgtcgcaatcgcgcc
gaggatggctccgaactggcggccggcgaagccggtgaagacaatggcagcgacgaggac
gaaggcgacgacgtttcgaacgacggcgccccgagcgaagccgtagcggtcgaggccatt
gccgaacaggccgacgaaggccagaccgcgatggcggccgtcgagagcgcgcctgtcata
accgaagaggtgaagcctgcccgtgcccgcggccgccgcaaaccggccgcatcgccggtc
gaggaaccggttgcagagacgccccctgcggtcgaggccgaaccggaattggtggaagcc
tccgccgatctcgaaatggccgttcaggaagaagcaaagcctgttcgcgccaaccgcgaa
tccaacatctcctcctccgagccaacggtgaaatccacccgcgtcgagaatggcgaaggc
gatgacggcaagccgaagaaagccggttggtggcagcgtcgtggcttcttctga
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