Rhizobium leguminosarum bv. trifolii WSM1689: RLEG3_25385
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Entry
RLEG3_25385 CDS
T03009
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rlb
Rhizobium leguminosarum bv. trifolii WSM1689
Pathway
rlb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rlb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RLEG3_25385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rlb03021
]
RLEG3_25385
Transcription machinery [BR:
rlb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RLEG3_25385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Phage_DsbA
DUF4351
Imm3
DUF3106
Motif
Other DBs
NCBI-ProteinID:
AHF84943
LinkDB
All DBs
Position
complement(2988618..2990675)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKVKENEDAEVERDSASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAGASGGSDDDDAGGDEESEGGELAPSSGTALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKLAEEKEKTRRARSGDD
DITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDTIAETYKKLRKLQDQQVE
QRLSASGTLSTAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVSNEGRLL
RLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFARGENTTIRDIRQEIQNLA
TETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNA
LLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagacgcggaagtcgaacgcgacagcgcaagcgac
ggccctcttctcgatctttccgacgacgcggtcaagaagatgatcaaagccgccaagaag
cgcggctatgtgaccatggacgagctcaacgcggtcctgccgtccgaagaagtgacgtcc
gagcagatcgaagacacgatgtcgatgctgtcggacatgggcatcaacgtcatcgaagac
gaggaagccgaggaagccggtgcttccggcggcagcgatgacgacgacgccggcggcgac
gaggagagcgaaggcggcgaactcgcgccttcgagcggcacggcgctggcgaccgccaag
aaaaaagaaccgaccgaccgtaccgacgatccggttcgcatgtacctgcgtgagatgggc
tcggtggagcttctgtcacgcgagggtgaaatcgcgatcgccaagcgcatcgaggccggc
cgcgagacgatgattgcgggtctctgcgagagcccgctgaccttccaggcgctgatcatc
tggcgcgacgaactcaacgaaggcacgacgctgctgcgcgagatcatcgatctcgaaacg
acctattccggccctgaagccaaggctgcgccgcagttccagagcccggagaagatcgag
gccgatcgcaagctcgcagaagagaaggaaaagacccgtcgcgcccgctccggcgacgac
gacatcaccgatgtcggcggcgaaggcctgcctcccgaggaggaggaagaggacgaggac
gagtccaacctttcgctggcggcgatggaagccgagcttcgcccgcaggtgatggagacg
ctcgatacgatcgccgagacctacaagaagctgcgcaagctgcaggaccagcaggtcgag
cagcggctgtcggcttccggcacgctgtctactgcccaggagcgccgctacaaggaactc
aaagatgagctcatcaaggccgtcaaatctctgtccttgaaccagaaccgcatcgacgcc
ctcgtcgagcagctctatgacatcaacaagcgcctcgtttccaatgagggtcgcctgctg
cgcctggccgaatcctatggcgtcaagcgtgactccttcctggaacagtaccagggcgcc
gagctcgatccgaactggatgaagtcgatcggcaatctggccgcccgcggctggaaggaa
ttcgccaggggcgaaaacacgacgatccgcgacattcgccaggaaatccagaatctggcg
accgagaccggcatctcgatctcggaattccgccgcatcgttcatatggtgcagaagggt
gagcgcgaagcgcgtattgccaagaaggaaatggtcgaagcgaaccttcgcctcgtcatc
tccatcgccaaaaagtacacgaaccgtggcctgcagttcctcgacctcattcaggaaggc
aatatcggcctgatgaaagcggtcgacaagttcgaataccgccgcggctacaagttctcg
acctatgcgacatggtggatccgtcaggcgatcacccgttcgatcgccgaccaggcccgc
acgatccgcattccggtgcacatgatcgagacgatcaacaagatcgtccgcacgtcgcgc
cagatgctgcacgagatcggccgcgagccgacaccggaagagctggccgaaaagctcgcc
atgccgctcgaaaaggtccgcaaggtcctgaagatcgccaaggagccgatctcgctcgaa
acccctgtcggtgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcg
ctgctgccgatcgacgccgccatccaggcgaacctgcgcgagacgacgacccgcgttctc
gcctcgctgacgccgcgcgaagaacgtgttctgcgcatgcgctttggcatcggcatgaac
accgaccacacgcttgaagaagtcggccagcagttctcggtcacccgcgaacgtatccgc
cagatcgaggcgaaggcgctgcgcaagctgaagcatccgagccgctccagaaagctgaga
agcttcctcgacagctag
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