Rubripirellula lacrimiformis: K227x_02770
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Entry
K227x_02770 CDS
T07352
Symbol
hrpB_1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rlc
Rubripirellula lacrimiformis
Brite
KEGG Orthology (KO) [BR:
rlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlc03019
]
K227x_02770 (hrpB_1)
Enzymes [BR:
rlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K227x_02770 (hrpB_1)
Messenger RNA biogenesis [BR:
rlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K227x_02770 (hrpB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
AAA_22
DEAD
HA2_C
HA2_N
AAA_19
RsgA_GTPase
nSTAND3
T2SSE
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
QDT01908
UniProt:
A0A517N4H4
LinkDB
All DBs
Position
complement(367353..371513)
Genome browser
AA seq
1386 aa
AA seq
DB search
MKSKPTSPSLTGPVPDSSQQPKRETEGPAAPSANAAAAAASAGGGPDADAPVVGGQATGQ
PAIAGQVMRIDAARLRRAKKRLSPEDYAKQAAKAADQLAARQAANPRIEYPAELPITAHR
EELVSLIRENQVIVVCGETGSGKSTQLPKFCLEAGLGRTGMIGHTQPRRLAARSIASRLA
EELDTPLGKVVGYQVRFGDHTTTETLVKLMTDGILLAETQSDKFLDAYDVVIIDEAHERS
LNIDFLMGYLRNLQTKRPDLKIIITSATIDAQRFATHFGTEDNPAPIVNVEGRGYPVEIK
YLPWDDVTSENVRGYDIARHVIEGIEVANRNGHGDMLVFLPTERDIREVSHRVTGHYKRM
GATGRVDLLPLYARLPQSEQQRIFNPSGNKRRIIFATNVAESSLTVPGIRFVIDAGTARI
SRYSVRSKVQRLPIEPVSRASADQRAGRCGRVGPGVCIRLYSADDYENRESYTTPEIRRT
NLASVILQMKTLRLGKLEAFPLLDPPRPEAIREGLRTLTELGAIDDRHEVTDIGWKLGRM
PVDPRVGRIILAAHENGVLAEILPIAAALEIPDPRDRPPEKQQAADEAHAIFTDARSDFL
SYLRLWRYYESAREEHSKNKLIRVLRKQFLSPTRMREWSDVYRQLREMTATTLAEKGKPK
HRVGKIRFDEDDAKLVTDNHYAAIHQSLLAGLLSGVAMAGDKNEYTGAGGLKLFLWPGSG
VFATKPKWIVSGELVETAKTFARTVAQIQPGWIETVAAHLMKRSHHDPHWSGKSGAAFCY
QNQTLFGLPIVTRRRVPLSPIDPSTARDLLIDRGLAESELTTTAKFVRHNRTLQESIAAL
AAKTRRRDMVIDDYIVAAFYQARLPADVCDRGRLEKLDRSIEPPAWTKSIRDSAGVSQWL
ADPPADDDSASLYMRPDDLIETQTNTITQNDFPDELTIGNSRLPLDYRFEPGSERDGVSL
KVHQAALSQISDDRLGWLVPGLLHTKIVGMIKSLPKRIRRNLVPAADVASKIIDELADDY
GQVPFLPAVCAAMTRHAEVPVSPFDFQDEKLDPHLQFLVTVVDDEGETIAEGRQVSPLVA
RVGDSKSAQPNAAAEIDDEWTRDGMTSFDLERLPREVVRVRGGVHVAQYPGLVDTGKDVK
TSLFADANTADAAIRGACVRLFSIAERKELRSQVRWLPGLDQAKIKLSGVVSAGDMEDAM
IDLLARVAFVEGQSVIRTAEEFEARRKERSRRIAQATIEIAGWVGNLADAYFDARKEIES
VGKSGRFSPSIGDAKLQVQWLVFDGFMRQVPWAWLKHYPRYFKAIAYRIDKLRSGSGPRD
DESRKLVQELWKRWLDGLTTYEPADHTESEFRWLIEELRVSLFAQPLGTSTKVSPKRCEK
LLETRS
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccaaaccaacctcaccttccctgaccggaccggtccccgattcttcccagcag
ccaaagcgggaaacagaaggtcccgcggcgccgtcggcaaatgcagcagccgcggccgcg
tccgcaggggggggaccggatgcagacgcaccggtcgttgggggacaggcaaccgggcaa
ccggcgattgccggtcaggtcatgcggatcgatgcggcccgacttcgccgtgccaagaaa
cggctgtcgcccgaagactatgccaaacaggccgccaaggcagcggatcagctggcagcc
cggcaagccgccaacccgcggatcgagtatccggccgaacttccgatcaccgcgcatcgc
gaggaactggtttcgctgattcgtgaaaaccaagtgatcgtcgtctgtggcgaaaccggc
agcggcaaaagcacccagttgcccaagttctgtctcgaagccggcctgggtcgaacgggc
atgattggccatacgcagccacgacgactggccgcgcgtagcatcgcatcacggttggcc
gaggaactggatacgccgttgggaaaggtggtcggttaccaagtccgattcggggaccat
acgaccaccgaaactctggtcaaactgatgaccgatgggatcctgctggccgagactcag
tcggacaagttcctggatgcctatgacgtggtgatcatcgacgaagcgcacgaacgttcg
ttgaatatcgatttcttgatgggctaccttcgcaatctgcaaaccaagcggcccgacctg
aagatcatcatcacgtcggcgacgatcgatgcccagcgattcgcaacgcactttggcacc
gaggacaacccggccccgatcgtcaacgtcgaaggtcgtgggtatccggtcgagatcaaa
tatctgccatgggatgacgtcaccagcgaaaacgttcgcggttacgacatcgcccggcat
gtcatcgaaggaatcgaagtcgccaaccggaatgggcacggcgacatgctggtcttcctg
ccgaccgaacgtgatatccgcgaagtctcgcatcgcgtgacaggtcactacaaacgcatg
ggcgcgaccggccgtgtggacctgctgccgctgtacgcgcgtctgccccaatccgaacaa
caacgcatcttcaatccgtcgggcaacaaacggcggatcatctttgccaccaacgttgcc
gaaagctcgctgaccgttcccggaatccgattcgtgatcgatgccggcaccgcacggatc
agccgctacagcgtgcgcagcaaggtccaacgtttgccgatcgaaccggtcagtcgggcc
agcgccgatcaacgcgccgggcgttgtggtcgtgtcgggccgggtgtttgcattcgactg
tattcggcggacgactacgaaaaccgcgaatcctataccacacccgaaatccggcgtacg
aatctggcctcggtcatcctgcagatgaagactctgcgattgggcaaattggaagctttc
ccgctgctggatccgcctcgccccgaggcgatccgcgaggggctgcgtacgctgaccgaa
ttgggtgcgatcgacgaccggcatgaagtcaccgacatcggttggaaattgggccggatg
ccggtcgacccacgtgtcggacgaatcatcttggcggctcacgaaaacggggtgctggcg
gagatcctgccgatcgcggcggctttggaaataccagatccgcgtgaccgtccaccggag
aagcaacaggctgccgacgaggcgcacgccatcttcaccgacgcccgcagcgacttcctg
tcctatctgcgactgtggcggtactacgaatcggctcgcgaagaacacagcaagaacaaa
ctgatccgcgtcctgcgaaaacaattcctgtcgcccacgcggatgcgtgaatggtccgac
gtgtatcgccaacttcgcgagatgacggcaacgacgcttgccgaaaaaggaaaacccaag
caccgcgttggcaagatccgctttgacgaagacgacgccaagttggtgacagacaatcat
tacgcggcgatccaccaatctctgttggcaggtctgttgtctggcgtcgcgatggccggc
gacaagaacgaatacaccggcgccggcggattgaaattgttcctgtggccaggcagcggc
gtgttcgccaccaaacccaaatggatcgtatcgggcgaactggtcgaaactgccaagacc
tttgcgcgaaccgtcgcccagatccaacccggttggatcgaaaccgtcgccgcccacctg
atgaaacggtcgcatcacgacccgcattggagcggcaagtctggggcagcgttctgttac
cagaaccaaaccttgttcggtttgccaatcgtgacccgtcgccgtgttccgctgtcgccg
atcgatccatcgacggcccgggatttgttgatcgaccgcggactggccgaatccgaactg
acgaccacggccaaattcgttcgtcacaatcgcacgcttcaggaatcgatcgcagccctg
gcggccaaaactcgccgccgcgatatggtgatcgatgactacatcgtggccgcgttctat
caggctaggttgccagccgatgtctgcgaccgcggtcgattggaaaaactggaccgatcg
atcgagccacccgcatggaccaaatcgatccgcgattccgccggtgtgtcccagtggttg
gccgacccaccggccgacgacgattcggcatccttgtacatgcgtcccgatgatctgatc
gaaacgcaaaccaacacgatcactcaaaacgactttcccgacgaactgacgattggcaat
tcacgcctgccgttggattaccgattcgaaccgggatcggaacgcgacggtgtgagcctg
aaagtccaccaggcggccctatcgcagatcagtgacgatcgactcggttggctggtcccc
ggactgctgcacaccaagatcgtcggcatgatcaaatcactgcccaaacggattcgccgc
aacctggtcccggcggcggacgtggccagcaagatcatcgacgaattggccgacgactat
ggacaggttccatttttgccagccgtttgcgcggcgatgacacgccatgccgaagtgccg
gtttcgccgtttgatttccaggacgaaaaactagacccgcatttgcagttcttggtcacc
gtggtcgacgacgaaggcgaaacgattgccgaaggtcgccaagtatcaccgttggtcgca
cgtgtcggtgattcgaagtccgcacaacccaatgctgccgcagaaatcgacgacgagtgg
acacgcgatgggatgacatcgttcgacttggaacgactgccacgtgaagtggtacgcgtc
cgaggcggcgtacatgtggctcagtaccccggcctggtcgacactggcaaagacgtcaaa
acatcgttattcgccgatgcaaacacggccgacgcggccattcgtggtgcctgtgtgcgg
ttgttttccatcgcggaacgcaaagaacttcgatcccaggtgcgttggttgcctgggcta
gaccaagccaagatcaagctctcgggcgtcgtatcggctggcgatatggaagacgcgatg
atcgacctactagcccgcgtcgcgttcgtggaaggccagtcggtgatccgcacggccgaa
gaattcgaagcccgacggaaggaacgttcacgccggatcgcacaagccacgatcgaaatt
gccgggtgggtgggcaaccttgctgacgcctacttcgacgctcgcaaagaaatcgaatcg
gttggcaagagcggacgattctcgccatcgatcggcgatgccaaacttcaggtgcaatgg
cttgtattcgatgggttcatgcgtcaggttccctgggcatggctaaaacactatccgcga
tacttcaaagccatcgcctaccggatcgacaaattacgcagcgggtcgggaccgcgggat
gacgaatctcgcaagctggtccaagagctatggaaacgctggctcgatggactgacgacc
tacgaaccggcggatcataccgaatcggaatttcgttggctgatcgaagaactgcgcgtc
agcctgtttgcccaaccgctaggaacgtccacgaaagtgtctccgaaacgttgcgaaaag
cttctcgaaacgcgttcttaa
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