Rubripirellula lacrimiformis: K227x_12370
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Entry
K227x_12370 CDS
T07352
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase YjcD
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rlc
Rubripirellula lacrimiformis
Pathway
rlc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K227x_12370 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlc03400
]
K227x_12370 (yjcD)
Enzymes [BR:
rlc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K227x_12370 (yjcD)
DNA repair and recombination proteins [BR:
rlc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K227x_12370 (yjcD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QDT02858
UniProt:
A0A517N784
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All DBs
Position
complement(1663347..1666010)
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AA seq
887 aa
AA seq
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MTDSQPNIDVNSLSTTAKPSPKSDSMDDGNLRPTLVRASAGTGKTYRLTARLLRILLQGA
APETILATTFTRKAAGEILERVLLSLARAADESDPDALDALRQQVGIPTLPRSVCLKLLE
TLLKNIHRLRICTLDSLFSQLARSFPFELGLPPAWRLTDEIEEAWLRERAVDSVIAMLDR
GEMMAVLSMLGKGDIKRSIARELLQVVEAAYGSQRLAGPDVWKKLIAPKLPESAEITRAA
GVMRMAQPKQKRHRDKLEKMAEVLELRQFDAFAGDTMIANIASARRSHGEVLYYRAPFPE
GVDEAFDVAYAAAKSDVLSRMSAQNEATGTVIGAYDHHVGQLKQSGRSIGFEDVAIRLAA
EFSRLDQHSLAQRMDGAVDHLLLDEFQDTSPVQWSVLRPMAMRCAAVESPRENHSGDEER
TVPKSFFCVGDTKQAIYGWRGGVAEIFDAVADEVPGITEVEQNTSFRSSPVVVDAVNETF
KNLGRHSICDAADSRDPTDKAMYEAVAVRDFARRFPVHSTAKSDLPGHFQLETCSAVENG
DSAARQRACFEDAARIAAEINAANPDRSIGILTRTNRGVAQLIYLLEQMDVDVSQEGGNP
LTDSAAVEMVLSALMMAEHPGDGRWAFHISATPLAKVPGFGADFVRAMCDDRGIPETIEF
LAGQLAPLCDARETLRLKQLTSLALGYQQNPAPRLRDFVRMVREKRVERPQAAPVRVMTV
HQSKGLEFDAVILPELDGALTRARGGCVPDIDTPSSPPKGLSRYIGSASWHFLPATWQRA
FGRQAEGAMTEALCLLYVAMTRARQSLRIVIQPTSKKAFATRTASSLIYHALQCQEDPTE
PATVLYSQGDPQWMGSPDPDSVTARNDASASEREATTIRFRPPVDAA
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgacggactctcaacccaacatcgacgtgaattcactttcgacgaccgccaaacctagc
cccaagagtgattcgatggacgatggcaatctgcgtcctacccttgtccgcgcatcggcc
ggaaccggaaagacgtatcgattgacggcgcgcctgcttcgaatcctgttgcagggtgcc
gcgcccgaaacgatccttgccaccacgttcacacgcaaagctgcgggcgagatcctggaa
cgggtgctactgtcgctggcacgggcggccgacgaatcggatcccgatgccctggacgcg
ctgcgccaacaggtcggtatccccacattgccgcgtagcgtttgtctaaagctgctagag
accttgctgaagaacattcaccggcttcggatctgcacgctagacagtctgttttcgcaa
ctagcccgatcgttcccgttcgaactaggcctgccaccggcttggcgattgaccgacgaa
atcgaagaggcatggcttcgcgaacgggccgtcgattccgtcatcgcgatgctggaccgt
ggcgaaatgatggccgtcctatcgatgctgggcaaaggagacatcaagcgatcgatcgcc
cgcgaactgttgcaggtggtcgaggctgcctacggtagccaacggctcgccggaccggat
gtgtggaagaaattgatcgctccgaaactgcccgaatcggccgagatcacccgtgcggcg
ggtgtgatgcggatggcccaacccaaacagaaacggcatcgcgacaaactggaaaagatg
gccgaagtcctggaactgcggcagtttgatgcgttcgccggcgacaccatgattgccaac
attgcgtcggcgcgtcggagccatggcgaagtgctgtattaccgggctccgttccccgaa
ggcgttgacgaagcattcgatgttgcctacgcggcggccaaatcggatgtgctgtcgcga
atgagtgcccagaacgaagctaccggaacggtcatcggtgcctacgatcaccatgtggga
caactgaaacagtccggtcgatcgatcggattcgaagacgtcgccattcggttggccgca
gagttttcgcgactggaccaacattcattggcacagcggatggacggcgccgtggaccac
ttgctgctggacgaattccaggacacttctccggtgcagtggagtgtactgcgaccgatg
gcgatgcgctgtgccgcggtggaatcaccgcgtgagaaccattccggtgacgaagaacga
accgtccccaagtcgttcttttgtgtcggcgataccaagcaagccatttacgggtggcgt
ggtggtgtggccgagatctttgatgcggtcgccgacgaggtcccggggatcaccgaggtc
gaacagaacaccagttttcgcagcagccccgttgttgtcgacgccgtcaacgaaacattc
aaaaacctggggcgtcattcgatctgtgacgccgcagattcccgcgacccgactgacaaa
gcgatgtacgaagcggtcgcagtgcgtgacttcgcacggcgattcccagttcactcgacc
gccaaatcggatctgccaggccactttcaactggaaacctgcagcgcagttgaaaacggt
gattcggcagctcgccaacgggcgtgtttcgaagacgcagcccgcatcgctgccgagatc
aatgccgccaacccggaccgatcgatcggcatcctgactcgcaccaatcgtggtgtcgcc
cagctgatctacctgttggaacaaatggacgtcgatgtcagccaagagggtggaaacccg
ctgaccgattcggcagccgtcgaaatggtgctgtcggcgctcatgatggcggaacatccc
ggcgatggacgatgggcgttccacatttcggcaaccccgttggccaaggtgcccggtttt
ggcgcggacttcgtgcgtgcgatgtgtgatgaccgaggaatcccggaaacgattgaattc
ctggcgggccaattggcgccactatgtgatgctcgcgaaacactacgattgaaacaactg
accagtctggcactcgggtatcagcagaaccccgcgccgcggctgcgtgactttgtccgg
atggttcgcgagaaacgagtcgaacgtccgcaagcggcgccggtccgcgtgatgacggtt
caccaatccaaaggactggaatttgatgccgtgatcctgccggaactcgatggcgcgttg
actcgcgcccgcggcggttgcgtgccggacatcgacacccccagttcgccaccgaaggga
ttgtcgcgttacatcggcagcgcgtcctggcactttttgccggcgacttggcaacgcgcg
tttggtcgccaagccgagggtgccatgaccgaagcgctctgcctgctgtacgtcgccatg
actcgtgctcgccaatcgctgcgaatcgtgatccagccgacgagcaaaaaagcgtttgcg
acccgaacggcatcgtccttgatctatcacgcgctgcagtgccaagaagaccccaccgaa
ccggcgacggtgctgtacagccaaggcgatccccagtggatgggttcgcccgaccccgac
agcgtcacagccagaaacgacgcgtcggctagcgaacgcgaagcgaccacgatccgtttc
cggccccccgtagacgccgcctga
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