Rubripirellula lacrimiformis: K227x_16820
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Entry
K227x_16820 CDS
T07352
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rlc
Rubripirellula lacrimiformis
Brite
KEGG Orthology (KO) [BR:
rlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rlc03016
]
K227x_16820 (rnd)
Enzymes [BR:
rlc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
K227x_16820 (rnd)
Transfer RNA biogenesis [BR:
rlc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
K227x_16820 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QDT03300
UniProt:
A0A517N853
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All DBs
Position
2238612..2239802
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AA seq
396 aa
AA seq
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MKYESINTVEQLQQFCQEIAECPRIGFDTEFVSEDTFRPLLCLIQVVAGDRLAIIDPLEC
KDTSAFWDLLTEPGRTVIAHAAREEARFCIRFTGKPIAGLFDTQLAAGFVGMEYPASLGT
LVQRLVGKTLPKGETRTNWYRRPLTKDQITYALHDVTDLFEMHDQLAKMAEDLQRADWLE
EETAIFQQKVIDAESRENWRRVSGASGLNPRQLETVRQIWLWREERARDLDRLPKRILRD
DLLVELARKGSTDVQKIRGIRGMERRGFSDQYEAIAEAIGTALATPDADLPRRPRGTRRV
VSPMLSQFLSTSIACISRQHKLAPSIVGNAEDVRELLGYELDRRDKDAEPSLLKGWRGEI
VGKTFRRILAGELAIRVADVKESQPLEFIEVDPSKK
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatacgagtccataaatacggtcgagcagctacagcagttttgccaagagatcgcg
gaatgcccgcgaatcggttttgatacggaatttgtctccgaagacacgtttcggcccctg
ttgtgcctgattcaagtggtggccggcgatcgtctagcgattatcgatccgttggaatgc
aaagacacttccgcgttctgggatctgttgaccgagcccggccgcaccgtgatcgcacac
gcggctcgcgaagaagcccgtttttgcatccgattcaccgggaaaccgatcgccgggctg
tttgatacccaattggcggctgggtttgtggggatggaataccccgcctcgctgggcacc
ctggtccagcggttggtgggcaaaacgttgcccaagggcgaaacccgcacgaattggtat
cggcgcccattgaccaaagaccagatcacctacgccctgcacgacgtcaccgatctgttc
gaaatgcacgatcagttggccaaaatggccgaagaccttcaacgtgccgattggttggaa
gaagaaacagcgatctttcagcaaaaagtcatcgatgccgaatcacgcgaaaattggcga
cgggtcagcggagcttccggtctgaatccgcgacaactcgaaaccgttcgccaaatctgg
ttgtggcgcgaagaacgggcccgcgatctggaccggctgcctaaacggattttgcgagat
gacttgttggtcgaactggcccgcaagggatcgaccgatgtgcaaaaaattcgtggcatt
cgaggcatggaacgtcgcggtttcagtgaccaatacgaagcgatcgccgaagcgattggt
accgctctggcaacgccggatgcggacctgccacgtcggccgcgcggaacacgacgcgtc
gtgtcaccgatgctgagtcagtttttgtcgacgtcgatcgcctgcatcagccgccaacac
aaactggcaccgtcgatcgtaggcaatgccgaagacgttcgcgaactgctcggctacgaa
ctcgatcgccgcgacaaagacgccgaaccttcgctgctgaaagggtggcgtggtgaaatc
gtaggcaagacgtttcgccgcatcctggctggcgaactcgcaatccgagtggcggatgtc
aaagaatcccagccgctggaattcatcgaagtcgacccatccaaaaagtag
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