Rubripirellula lacrimiformis: K227x_39390
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Entry
K227x_39390 CDS
T07352
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
rlc
Rubripirellula lacrimiformis
Pathway
rlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K227x_39390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rlc03021
]
K227x_39390
03019 Messenger RNA biogenesis [BR:
rlc03019
]
K227x_39390
Transcription machinery [BR:
rlc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
K227x_39390
Messenger RNA biogenesis [BR:
rlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K227x_39390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
Spore_III_AA
OB_RNB
S1CSD-TOTE-2
Mor
NACHT
Motif
Other DBs
NCBI-ProteinID:
QDT05538
UniProt:
A0A517NER0
LinkDB
All DBs
Position
complement(5170374..5171765)
Genome browser
AA seq
463 aa
AA seq
DB search
MAKKKRSNRNRNGSGGSGNGNGPNHGGGQGGGGGGGQGQGGGGGQNGKPRVRRRRRGGGG
GGGGGGGNGNNQNGGVDREPEISNDAPLLEGEGILELHPNGYGFLRTTENNYSRERSDPF
VPGTMIEKFGLRQGVQIKAMVQEARRQQGPRVREILDVDGIKPEDYPEVPNFDTLTAINP
EKWLRLERGQRPVTNRVIDLLAPMGLGQRALIVAPPRSGKTIMLQDIATGMAENHPNVKL
MVLLIDERPEEVTDMKRNIVNGEVIASSLDMDVESHVRLSQLVIDRAKRLAEMGQDVFLM
LDSITRLARAFNKWVGRSGRGGATMSGGLDIKAMDVPKKLFATARAFQEGGSLTIVGTCL
VDTNSRMDEAIFQEFKGTGNMELVLDRRLADRRVWPSIDISQSGTRREELLHDEETYEAV
TMLRRTLSSMHPCDAMEQLTKQLGRFVSNDEFIKLISGAKTSL
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaagaaacgcagtaatcgcaatcggaatggttccggtggttcgggcaacggt
aacgggcccaatcacggcggaggccaaggtggtggcggcggtggtggccaaggccaaggc
ggtggcggtggccaaaacggaaaacctcgtgttcgtcgtcgtcgccgaggcggtggtggc
ggaggcggcggtggaggcggcaatggcaacaaccaaaacggtggtgtcgatcgcgaacca
gaaatctccaacgatgctccgctgctagaaggcgaaggcattctggaactgcatcccaat
ggttacggattcctgcggaccaccgaaaacaactactctcgcgaacgaagcgatccattt
gtgccgggcacgatgatcgaaaagttcgggctccgacaaggtgtccagatcaaagcgatg
gtccaagaggcacgccgccaacagggaccgcgagttcgcgagatcctggacgtggacggc
atcaagcccgaggattatccggaagtcccgaacttcgacactctgacggccatcaaccca
gaaaagtggctgcgtcttgaacgcggtcagcgaccggtcaccaaccgtgtgatcgatctt
ctggctccgatgggactgggccaacgagccttgatcgtcgccccgccccgcagcggtaaa
acgatcatgctgcaggacatcgcgactgggatggcagagaatcatcccaacgtcaaattg
atggtgctgttgattgacgagcgacccgaagaggtcacggacatgaagcggaacatcgtc
aacggcgaagtcatcgctagcagtctggatatggacgtcgaaagtcatgttcggcttagc
caattggtcatcgatcgggcgaaacgcttggccgaaatgggccaagatgtgttcctgatg
ctcgattcgatcacccgattggctcgtgccttcaataagtgggtggggcgatccggtcgt
ggcggagcaaccatgtcgggtggtttggacatcaaggcgatggacgtgccgaagaaattg
ttcgccaccgctcgcgccttccaagaaggtggttcgttgacgatcgtgggcacctgcctg
gtcgatacgaacagccggatggacgaagcgattttccaagagttcaaggggaccgggaac
atggaattggtcctggatcgccgcttggccgatcgccgcgtttggccttcgatcgacatt
tcgcagagcggtacccgccgcgaagaattgttgcacgacgaagaaacctacgaagcggtc
acgatgctgcgacgaacgctcagttcgatgcacccctgcgatgccatggaacaattgacc
aagcagttggggcggtttgtcagtaatgatgaattcatcaagctgatcagcggtgcaaaa
acatcgctgtaa
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