KEGG   Rubripirellula lacrimiformis: K227x_42650
Entry
K227x_42650       CDS       T07352                                 
Symbol
ygcB
Name
(GenBank) CRISPR-associated endonuclease/helicase Cas3
  KO
K07012  CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
Organism
rlc  Rubripirellula lacrimiformis
Brite
KEGG Orthology (KO) [BR:rlc00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rlc02048]
    K227x_42650 (ygcB)
Enzymes [BR:rlc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     K227x_42650 (ygcB)
Prokaryotic defense system [BR:rlc02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Type I signiture cas proteins
    K227x_42650 (ygcB)
SSDB
Motif
Pfam: Cas3-like_C_2 DEAD Helicase_C Cas3_HD HD
Other DBs
NCBI-ProteinID: QDT05860
UniProt: A0A517NFE8
LinkDB
Position
complement(5627643..5630294)
AA seq 883 aa
MQSWFNELTGHDSPRPWQLDLLQQNQCRSKLLRIPTGMGKTEGVLSAWLYHRIVRKDESW
PRRLVWCLPMRVLVEQTVAVAEAIAKRVKNGPSVGVLMGGEDMEEWFLQPEQPWILIGTQ
DMLLSRALNRGYASGRARWPMEFGLLNQDSLWVMDEIQLMDVGLATSAQLQSYRDQDAGK
SLRPCYTWWMSATLQPDWLHSVDSASSFDQWATTPCVVPPEDRHGGLWETSKSISTDAIA
STDSRVFAERVLVEHEQTEPSEFGRVTLVVCNTVDRACDTFDALKKESPETEVHLVHGRF
RPWERKPWRDKFLSRSACTPDADRIIVATQVVEAGVDISSGCLVTELAPWPNLVQRFGRC
ARYGDAGRVIVIDRGQDEKSSPPYSADSLTSAWAAVQSLSDVGIKRLEEYEEQLEDDARA
LLYPYEPAHLLMRNEFDELFDTTPDLTGADLDISRFIRSGEERDVKVFWIQIAKAKTPDQ
KRQPQRAELCSVPFMKSRDWLCGKETQTNRKPGLRGGMLAWVWDWLDGEWVVARRESLLP
GRIVCVAASAGGYTTVQGFTPNASDAVPVVEHNGTELDAVDEADNEHDGEALSFSEWKTI
ACHSDEVIEAVARMAEQLQFPPNLTRILKLAARWHDVGKSHPAFQGAIVDATDESRPVRC
DLAKGPPSAWVQPPGTYRMTDDGNRREYRRSFRHELASAMALFTVAKIYQPDHPGLLGPW
REIFKEMGQSLECLPTRENPPDEIQAVLDCTSEEFDLLVYLVASHHGKVRVSLHASPADQ
DFHARANDDRGLPIRGVRNGDILPSITISVGGQQLPELPLSLAPAAMGLSHETGASWRER
CQSLLTTHGPARLAMLEAILRAADVEASRLNAEDAAIMDEVTV
NT seq 2652 nt   +upstreamnt  +downstreamnt
atgcaatcatggttcaatgaactgaccggacatgactcaccacggccatggcagttagat
ctgctccagcagaatcagtgccggagcaagttgttgcgtattccaactgggatgggcaag
acggaaggtgtgttgtcggcgtggctgtatcatcgaatcgttcgcaaggatgaaagctgg
ccgaggcggttggtgtggtgcttgccaatgcgggtacttgtggaacaaaccgtggcggtg
gcggaggcaattgccaagcgtgtgaaaaatgggccgagtgtcggggtgctaatgggcggc
gaggacatggaagaatggtttctacagccggagcagccttggattttgattggcacgcag
gatatgctgctgtctcgcgcattaaatcgtggatacgctagcggtcgcgcccgatggccg
atggagtttggtcttctgaaccaggactcgttgtgggtgatggacgagattcagttgatg
gatgtcggtttggcgacctccgctcaactccagtcgtatcgtgatcaggatgcgggtaag
agtctgcgaccgtgctatacatggtggatgagcgcgacactgcaaccggattggctgcat
agcgtcgactcagcatcatcgtttgatcaatgggcgactacgccttgcgtcgtgccgccg
gaagatcgccacggagggctttgggaaacctctaagtcgatctctaccgatgcgatcgct
tcaactgatagtcgagttttcgcggaacgtgttttagtcgagcatgagcagactgagccg
agtgagttcgggcgtgttacgctggttgtatgcaacactgttgatcgcgcctgcgatacc
ttcgacgcactgaagaaagaatcgccagaaaccgaagtgcatctagtccatggtcgtttt
cgtccatgggaacgcaagccgtggcgtgacaagtttttgagtcgctcggcatgcacgcca
gacgcggatcgaatcatcgtcgcgacacaggttgtagaagcgggggtcgacatttcgtct
ggctgtttggtcacggaacttgcgccgtggccaaatcttgttcagcgattcggacgttgt
gctcgctacggtgacgccggacgagtgattgtgattgatcgtggccaggacgaaaaatcg
tcgccaccctactccgctgactcactcacaagtgcctgggcagcggtgcagtcgctgtca
gacgttggtatcaagcgtctcgaggaatacgaggagcaactcgaagatgatgcgagagct
ttgctgtatccctatgaaccggcgcatttgctgatgcggaatgagtttgacgagttgttc
gacacaacgcctgatctcaccggtgcggacttggacatcagccgcttcattcggtccgga
gaggaacgcgacgtcaaagtgttttggatccaaattgcgaaagccaaaacgcccgaccaa
aaacgacaaccgcaacgagcggagctgtgctccgtcccgtttatgaagtcgcgagactgg
ctttgcggcaaggaaacacagaccaatcgcaagccaggactgcgtggcggaatgctcgct
tgggtttgggattggctcgacggcgagtgggtcgtcgctcgacgggaatcgttgctgccc
ggtcgaatcgtttgcgttgctgcctccgctggtgggtacacaaccgtgcaaggttttacc
cccaatgcaagcgatgccgttccagttgtcgaacacaacggtaccgagttagatgcagtt
gacgaagcagacaacgagcacgatggcgaagcgttgagtttcagcgagtggaaaacgatt
gcatgtcatagtgatgaggtcatcgaagcggtggcccgcatggcggagcaattgcagttt
ccgccgaatctcactcgtattctgaaactagcagcacgttggcacgacgttggtaaatcg
catcctgcgtttcaaggtgccattgttgatgcaacggatgaaagccggccggtgcgatgc
gacctggcgaaaggtccaccatcggcttgggtacagccacccggcacgtacagaatgacg
gatgatggaaatcgtcgagaataccgacgttcatttcggcatgaacttgccagcgcaatg
gcattgtttacagtcgcgaaaatttatcagccggaccatcctgggctgctcggtccgtgg
agagaaattttcaaggaaatgggtcagtcactcgaatgcctgccaacgcgtgagaatccg
cccgacgaaatccaagcggttctagactgtacgtcggaagaattcgacctgctcgtttac
ttagttgccagtcatcacggcaaggtgcgtgtatcgctacatgcgtcgccagccgatcag
gattttcatgctcgggccaatgacgatcgtgggctgccaatacgtggagttcgaaatggg
gacatcttgccatccatcacaatttcggtgggcggccaacagttgcctgagttgccgctc
agtctggctccggccgcaatgggtttgtcccacgaaacgggggcgagctggcgtgaacgt
tgtcagtcgttactgacgacgcatggcccagcgcggctggccatgttggaggccattcta
cgtgcggccgacgtggaagcgtcgcgactaaacgcagaagatgcagcgatcatggacgag
gttaccgtatga

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