Rubripirellula lacrimiformis: K227x_47870
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Entry
K227x_47870 CDS
T07352
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rlc
Rubripirellula lacrimiformis
Brite
KEGG Orthology (KO) [BR:
rlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rlc03032
]
K227x_47870 (topA)
03400 DNA repair and recombination proteins [BR:
rlc03400
]
K227x_47870 (topA)
Enzymes [BR:
rlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K227x_47870 (topA)
DNA replication proteins [BR:
rlc03032
]
Prokaryotic type
DNA Topoisomerases
K227x_47870 (topA)
DNA repair and recombination proteins [BR:
rlc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K227x_47870 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QDT06378
UniProt:
A0A517NH17
LinkDB
All DBs
Position
6302059..6304764
Genome browser
AA seq
901 aa
AA seq
DB search
MAKSTGKALVIVESPAKARTIAKFLGANYLVEASIGHVRDLPAGKKEVPEKFKAEPWAYL
GVNTDADFEPLYIVPDEKKKQVKKLKDALKQADELYLATDEDREGEAISWHLQELLKPKV
PVHRLVFHEITKEAIQNALSATRKIDDSLVKAQETRRILDRLYGFDMSNLLWRKIGKGTS
AGRVQSVAVRLIVDRERERIAFVDSTYWDLGAVFATAAGEPLQATLSTVDGRRIPRGNDF
DSTTGQLKNQDLLQMNEVQANELAEKLRKADFKVTKVEVKPFTERPRPPFTTSTLQQEAN
RKLGFTAKRTMSAAQRLYENGYITYMRTDSMTLSKEAISAARNLVTSEYGQDFLHPDVRV
YKGKVKNAQEAHEAIRPAGTPFRVPETIRGELDSDQFRLFDLIWKRTVACQMADAKKQRI
SISIEGGGATFTASGTSILFEGFLRAYVEGSDNPELELANKDTLLPNVQSSDPLDAKELE
PKGHTTQPPARYTEASLTRTLEEKGIGRPSTYASIIGTITDERRNYIVKKGSALVPTWRA
FSVTRLMETHFGTLVDYEFTAELEDFLDSISRDEGDRDDYLRKFYFGDDSTDKHNVGLKH
RLVEKLDKIDPKESAMFTLGTPTEGEHLEEVFVRVGKFGPYLEQGDRTASIPDGLPPDEM
DLQKGLELLEAGQVEEEPIGSDPETGKPIYLKVGRFGPYIQLGEPDDPEKRNQGLLQGME
VADLTLELACKLLTLPRTLGEHPESKAPVQAFDGRYGPYIKCEKDTRSLPAGVSPLEVTF
QEALDLLKQPKTRGRGTPKEPLKMFEKPSPITEKEVKILEGRFGPYVTDGETNASLRKGM
EPKEMTFEAALDLLAERAAKGPTKKKKKKATKKKATKKKVAKKKTTKKKAAKKKGVAKKK
A
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaagcacgggcaaagcgttagtgatcgtcgaatcgccggcgaaagcacgaacg
atcgctaaattccttggcgcgaattacttggtcgaggccagtattggccacgttcgggat
ttgccggccggtaaaaaggaggtgccagagaagttcaaggccgaaccgtgggcctatctg
ggggtcaacacggacgccgatttcgaaccgctgtacatcgttccggacgaaaaaaagaaa
caagttaaaaagctgaaagatgctttgaaacaggccgacgaactctatctggcgacggat
gaagaccgcgaaggggaagcgatcagctggcaccttcaggaacttttgaagcccaaagtc
ccggttcaccgcttggtattccacgaaatcaccaaggaagcgatccaaaacgccctgtcg
gctacccgcaaaatcgacgactcgctggtcaaagcccaggaaacccgccggatcctggac
cgcctgtacggattcgacatgtcgaacctgttgtggcgaaaaatcggcaaaggaaccagc
gccggacgcgtccaatcggtcgcggtgcggttgatcgtcgaccgcgaacgcgaacgaatc
gctttcgtcgattcgacctactgggacttgggcgcggtctttgcgaccgccgctggcgaa
ccgctgcaggcgacgttgtcgaccgtcgacgggcgacgaatcccgcgtggaaacgatttc
gattcgacaaccggtcagttgaaaaaccaagacctgttgcagatgaacgaggtccaagcc
aacgaattggccgaaaaacttcgcaaagcagacttcaaagtcaccaaagtcgaagtcaaa
ccgttcaccgaacgaccacggccgccgttcacgaccagtacgctgcaacaggaagccaac
cgaaaacttggcttcaccgcaaaacggacgatgagcgcagcccaacggctgtatgaaaac
ggttacatcacttacatgcgtaccgacagcatgacgctttcgaaagaagcgatctcggcc
gcacggaacctggtgaccagcgaatatggccaagacttcctgcaccctgacgtccgcgtg
tacaaggggaaagtgaagaacgcccaggaggctcacgaagcgatccgccccgccggtacg
ccgttccgtgttcccgaaaccatccgcggcgaactggattcggatcagttccggttgttc
gatctgatctggaaacggaccgttgcgtgccagatggcggacgccaaaaagcaacgcatc
agcatcagcatcgaaggtggcggagcaacgttcaccgccagcggtaccagcatcctgttt
gaagggttcctgcgagcctatgtcgagggcagcgacaatccggaactggaactggccaac
aaagacacgctgttgcccaacgtccaatcgtcggacccattggacgccaaagaactggaa
cccaaggggcacaccacccagccgccagcccggtacacggaagcctcgctgacgcggacg
ctggaagaaaaaggcatcgggcgaccgagtacgtacgcatcgatcatcggcacgattacc
gacgaacgacgcaattacatcgtcaaaaagggttccgccctggtcccgacctggcgtgcg
ttcagcgtgacgcgattgatggaaacgcacttcggaacgttggtggattacgaattcacc
gccgaactggaagacttcctcgattcgatcagccgcgatgaaggggaccgcgatgactac
cttcgcaagttctacttcggcgacgattcgaccgacaaacacaacgtcgggctgaagcac
cgcctagtggaaaagctggacaagatcgatcccaaagaatcggcgatgtttactctgggc
acgcccaccgaaggggaacacctcgaagaggtcttcgttcgcgttggcaagttcggtccc
tacctggaacagggcgatcggaccgcatcgatcccggacggtttgccgcccgacgaaatg
gaccttcaaaaaggcttggaactgctggaagccggccaggtcgaagaggaaccgatcggc
tcggaccccgaaacgggcaagccaatctacctgaaagtcggccggtttgggccctacatc
caactgggcgaaccggacgatccagagaaacgaaaccaagggctgctgcaggggatggag
gtcgctgacctgacgctggaattggcgtgcaagctgctgacgctgccacgcaccctgggc
gaacaccccgaatccaaggcacccgtccaagcgttcgatggccgctacgggccatacatc
aagtgcgagaaagacacgcgttcgctcccagccggtgtttcgccgctggaagtgactttc
caggaagccttggacctgctgaaacaacccaagacccgcggccggggaaccccgaaagag
ccgctgaagatgttcgaaaaaccttcgccgatcacagaaaaggaagtcaaaatcctcgaa
ggccggttcggcccctacgtgaccgacggagaaaccaatgccagcctgcgaaagggcatg
gaaccgaaggaaatgaccttcgaagccgctttggacctgctggctgaacgagccgccaag
gggccaacgaagaaaaagaaaaagaaggcgacgaagaagaaagcgaccaaaaagaaggtt
gcaaagaagaaaaccacgaagaaaaaggccgccaagaagaagggcgttgccaaaaagaag
gcttag
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