Rubripirellula lacrimiformis: K227x_48120
Help
Entry
K227x_48120 CDS
T07352
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rlc
Rubripirellula lacrimiformis
Pathway
rlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K227x_48120 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlc03019
]
K227x_48120 (deaD)
03009 Ribosome biogenesis [BR:
rlc03009
]
K227x_48120 (deaD)
Enzymes [BR:
rlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K227x_48120 (deaD)
Messenger RNA biogenesis [BR:
rlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K227x_48120 (deaD)
Ribosome biogenesis [BR:
rlc03009
]
Prokaryotic type
rRNA helicases
K227x_48120 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Extensin_1
AAA_22
DUF3381
Motif
Other DBs
NCBI-ProteinID:
QDT06403
UniProt:
A0A517NH75
LinkDB
All DBs
Position
complement(6333586..6336123)
Genome browser
AA seq
845 aa
AA seq
DB search
MSSSSPTSEIPAHFPRNGRRVVLRPAADSEVSRPRNPVVATSAIAETVEQSVPAAPVAVA
PVAETPVAEAPVAEAPVAEAPVAETPVAETPVAQAPVAVAPVATEAPVVAPAPVAPAPVA
TEAPVDAGQPAVAEVQVAEVQVAQTPAAATPVAEVQATETPATPSSQSEDVSVSIQAEVQ
ADAAELKTVDQMLAELTADDKPKKKKKKKQRAAELAAAIDGEGNATDDADAEANATSGDE
TADEAIATENTFAGMDLPAAVQEAIVRSGYVTPSDIQAAIIPPMLAGRDVVAQSQTGSGK
TAAFALPILARLKARSPSPQVLVLAPTRELAVQVAKSFETYAGNLKGFSIAAIYGGQDYE
PQLRQLRRGVSVVVGTPGRVIDHVRRGSLSLEHLRCLVLDEADEMLNMGFLEDVEFVLQQ
CPAEKQVALFSATMPNPIRRIADQHLTDPHTVTISSKTMTADSINQRAIYATPREKIELL
RRLLEVEEVDGVIVFAKTKESTTVVAEKLVQMGYNAAALNGDMAQKARERTVDQLKNGRL
DIVVATDVAARGLDVPRISHVINFDLPHDNESYVHRIGRTGRAGRSGEAIIFLTNAQRGK
LRSIERLTNQQIQICDWPSTEDINNKRIERFKTKITRTLADRDVTFYEDLIGKYVEETGT
SIEKVAAALADQINSGRPFLVKDRPKAEPRSKRGDFDDARGGDRRESRSRESYGDDRPPR
RVGPVRPGMQRFRVEVGRTDGVKPGNLVGAIANEAGIESEFIGPISIQNDFTTVDLPEGM
PNDIFQTLSNTWVMGKQLRISRDTGGAGRSFGNRHQGGKPKPGKHKPGKMKSGKRSGGNP
NHSQG
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcttcgtcgcctacctccgagattcccgcccacttcccccgcaacgggcgtcgc
gtcgttcttcgtcctgccgctgactcggaagtctcgcgtcctaggaatccggtagtggcg
acttcagcgatcgctgaaaccgtcgagcaatctgttcctgcagcaccggttgcagttgca
ccagtcgccgaaacaccagtcgccgaagcaccagttgccgaagcaccagttgccgaagca
ccagttgccgaaacaccagttgccgaaacaccggttgctcaagcacctgtcgcagtagcg
ccagttgcgaccgaagcacctgttgtcgctccagcacctgtcgctccagcacctgttgcg
accgaggcacctgtcgacgcgggacaaccggctgtcgctgaggttcaagtcgctgaggtt
caagtcgctcagacgcccgctgctgcgactccggttgcggaagttcaggccactgaaact
ccggcaaccccgtcgtcgcagagcgaagatgtttcggtttcgatccaagcggaagtccaa
gcggatgccgcggaattgaagactgtcgatcaaatgttggccgagttgaccgcggacgac
aaacccaagaagaagaaaaagaagaaacagcgtgctgccgaactggctgctgcgatcgat
ggcgaagggaacgccaccgacgacgctgacgccgaagccaatgcgacttccggggacgag
accgccgacgaagcgatcgcgacggaaaacacattcgcgggcatggacctgccagcggcc
gtccaagaagcgatcgtgcgatcaggctatgtcactccatcggacatccaagcggcgatc
atcccgccgatgttggccggacgcgacgtggttgcgcagtcccaaaccgggtctggcaaa
acagccgctttcgcactgccaatcctggctcgattgaaggcccgctcgccatcgccgcaa
gttttggtgctggccccgacccgcgaactggctgtccaggttgccaagtcgtttgaaacc
tacgctggcaacctcaagggattctcgatcgccgcgatctatggtggtcaggattacgaa
ccacaacttcgtcaattgcgacgtggtgtttctgtcgttgtcggaacacccggccgagtg
attgaccatgtgcgtcgcggatcgctatcgctggaacacctgcgatgcttggtgctggac
gaagccgacgaaatgctgaacatgggattcctggaagacgtcgaattcgtcttgcagcaa
tgccccgcagagaaacaggtcgccttgttctcggcaacgatgcctaacccgattcgccgg
atcgccgatcagcacctgaccgatccccatacggtcaccatcagttccaagacgatgacg
gccgattcgatcaatcagcgagcgatctatgcgacgccgcgtgaaaagattgaactgctt
cgtcgtctgctagaagtcgaagaagtcgacggcgtgatcgtgttcgcaaagacgaaggaa
tcgaccaccgtcgtcgctgaaaagcttgtgcaaatgggctacaacgccgcggccttgaac
ggcgacatggcacaaaaggcacgcgaacgtaccgtcgaccaactaaaaaatggtcggctg
gacatcgtggtcgccaccgacgttgccgcacgtggtttggacgtgccgcgaatcagtcac
gtgatcaactttgatctgccacacgacaacgaatcttacgttcaccggatcgggcgaacc
ggacgtgctggacgtagcggcgaagcgatcatctttttgaccaatgcccaacgtggcaaa
cttcgatcgatcgaacgtctgaccaaccaacagatccagatctgtgactggccatcgacc
gaagacatcaacaacaagcgaatcgagcggttcaagaccaagatcactcgcacgttggcc
gatcgcgacgtgacgttctacgaagacttgattggcaagtacgtcgaagaaaccggcacc
tcgatcgaaaaggtcgccgccgcactggccgaccaaatcaattcggggcgtccattcttg
gtcaaagatcgtccgaaagcagaaccacgatccaagcgtggcgattttgacgatgcccgt
ggtggtgatcgccgcgaaagccgcagccgtgaatcctacggcgacgatcgtccaccacgc
cgcgttggccccgtccgtccaggcatgcagcgtttccgcgtcgaagtcggccgtaccgat
ggcgtcaaacctggcaaccttgtcggtgcgatcgccaacgaagcagggatcgaaagcgag
ttcatcgggccgatcagcatccagaacgactttaccaccgtcgatcttcccgaaggcatg
cccaacgacatcttccagactctgtccaatacctgggtgatgggcaaacagcttcggatc
agccgcgacaccggcggagccggtcgtagctttggaaaccgtcatcagggcggaaagcca
aagccaggcaaacacaagccgggcaagatgaagagcggcaaacgatcgggcggcaatccc
aatcattcccagggctag
DBGET
integrated database retrieval system
