Rubripirellula lacrimiformis: K227x_51730
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Entry
K227x_51730 CDS
T07352
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rlc
Rubripirellula lacrimiformis
Pathway
rlc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rlc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K227x_51730 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rlc03021
]
K227x_51730 (rpoC)
03400 DNA repair and recombination proteins [BR:
rlc03400
]
K227x_51730 (rpoC)
Enzymes [BR:
rlc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K227x_51730 (rpoC)
Transcription machinery [BR:
rlc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K227x_51730 (rpoC)
DNA repair and recombination proteins [BR:
rlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K227x_51730 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QDT06757
UniProt:
A0A517NHY9
LinkDB
All DBs
Position
complement(6821335..6825708)
Genome browser
AA seq
1457 aa
AA seq
DB search
MSNGETSNYDRINDYASVRISLARPQDIKGWSFGEVKKPETINYRTYRPEKDGLFCERIF
GPEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKAMPS
RLGNLLDMKTSSLEKVIYFQDYVVIDPGTTDLEPRQLLTEEEYRAARQQYGDGSFEADMG
AEAVRKLLNLLDLVTLSEQLRIDLVETGSKQKKKDLINRLKIVESIRDSDNRPEWMVLDV
VPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEVIIRNEKRMLQQ
SVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPRL
KLHQCGLPKKIALELYQPFIIRRLKELGHADTIKSAKKMLERKDEEVWDILEQVITNHPV
LLNRAPTLHRMGIQAFEPVLVEGNAIHLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAH
TLMMSTNNVFAPSNGKPIMSPSQDIVMGCYYMTAEMPDQRGEGMIFSGYDEVDLAFAQGA
IAVHAKIKMRLPKFQRLKTENGDGKYGDIIDTTPGRVRFNEMLPDGMDYYNQPMKSGDLA
LAISDCYQRLGRRATIHLLDDMMQTGFRESTRSGLSFATDDLVTPDTKTDFIKKAEKEVM
KLKKSYERGLMTGAERYNHVLDEWTSARELITTDMMQAMKNDIREGGWYINPVYLMSHSG
ARGGIEQIRQLAGMRGLMAKPTGEIIETPIKANFREGLSVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADVAQNVVITMNDCGTTQGITKGVVYRGEKVEVSLVDSINGRVSRQSIV
NPVTDEVIVRENEMITPDIARNIESMGLEKIQVRTPMTCDAPLGVCRCCYGMDMSTGTLV
EEGMAVGIIAAQSIGEPGTQLTMRTFHIGGSVNKQSVESDIKSKRSGEVRLTRMRAVENT
EGVPIVLNRNGEIALVDDRGREIESYPVPTGAAIRVKEGEKVNEGTVLCEWNPYSIPILS
EVNGKLRFEDIVEGETMRVEREASGNVRMLIMDHKGDLHPQMVVEDADGKALHVEYLPER
AMIIAKGGDMIVAGTVLAEMPREGGGVSDITGGLPRVTEIFEARKPKDPAVIAEVDGEVE
ILAERKRGKRTIIVRSESGIEREHLVPHGKHFQVHSGDFVKAGQALVEGPLVPHDILRVS
GEEAVQQYLLHEIQQVYQSQKVEINDKHCEIIIARMLRKVKIESAGDTNLLPGSVMDRFH
FRQANDELAKCLRVVKPGASDFHEGQIIPKEVFEQTNAEIEAMGGDPAKGKRPKSATAST
QLLGITKAAVQSNSFISAASFQETTKVLTEAALAGKVDKLVGLKENVILGHLIPAGTGFR
IFQESEVNYRREALEELASAPVQSLEESFPLLNADEGAAPSPASPSPAAEMPAAEAPADM
PSDQTLDQLLGGGQDPA
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatggcgaaaccagcaactacgatcgcatcaacgactacgcttcggtacgcatc
tcgcttgcccgcccgcaagacatcaaagggtggtcgttcggcgaagtaaagaagcccgaa
acgatcaactaccgtacctaccgtcccgaaaaagacgggctgttctgtgaacggattttc
ggccctgaaaaggactgggaatgtgcctgcggcaagtaccgcggcatgaagtacaagggc
atgatctgcgaccgctgtggtgtgaaagtcactcacagtcgtgtccgtcgtaaacggatg
ggccacatcgaattggccgctcccgttgttcacatttggttcttcaaggcgatgccgtcg
cgcttgggcaacctgttggacatgaagaccagttcgcttgaaaaggtcatctatttccaa
gactacgtggtcatcgatcccggcacgaccgacttggaaccgcgtcaactgttgaccgaa
gaagagtaccgcgccgctcgccaacagtacggtgacggttcgttcgaagccgacatgggt
gccgaagcggtacgcaaactgttgaacctgttggacctggtcacgctgtccgaacagctt
cggatcgacctggtggaaaccggatcgaaacagaaaaagaaagacctgatcaaccgcctg
aagatcgtggaatcgatccgtgacagcgacaaccgtcccgagtggatggtgttggacgtc
gtgcccgtgattcctccggatttgcgtccgttggtgttgctggacagcggtaacttcgca
acgtccgacttgaacgatctgtatcgccggatcatcaaccgtaacaaccgactgcgtaag
cttgtcgatttgaacgcgccggaagtcatcattcgcaacgaaaagcgaatgctgcagcag
tccgtcgatgcgttgttcgacaacaaccgttgcaagcgtcccgtgttgggttcgtcgaac
cgaccgctgaaatccttgaccgacatgatcaaggggaaacaaggtcgtttccgcgaaaac
ctgctcggcaagcgagtcgattactcggcacgtagcgtgatcgtggtcggtccacgcttg
aagctgcaccagtgcggattgcccaagaagatcgcgttggaactgtaccagcccttcatc
atccgtcgcctgaaagagctcggccacgccgacacgatcaagtcggccaagaagatgctg
gaacgcaaagacgaagaggtttgggatatcctggaacaggtcatcaccaatcaccccgtc
ttgctgaaccgggcaccgacgttgcaccggatgggcatccaagcgtttgaaccggtattg
gtcgaaggcaacgcgattcacttgcacccattggtttgcaagggtttcaacgccgacttt
gacggtgaccagatggccgttcacttgccgctttcgatcgaagcgcaagtcgaagcccac
actttgatgatgtcgaccaacaacgtgttcgcgccaagtaatggcaagccgatcatgtcg
ccgtcgcaggacatcgtcatgggttgctactacatgaccgccgaaatgcccgaccagcgt
ggcgaaggcatgatcttctcggggtacgacgaagtcgacttggcattcgcccaaggcgcc
atcgccgtgcatgcgaagatcaagatgcgtctgcccaagttccaacgcttgaaaaccgaa
aacggtgacggcaagtatggcgacatcatcgacaccactccgggccgtgttcgtttcaac
gaaatgcttcccgacggcatggactattacaaccagccgatgaagagcggtgacttggca
cttgccattagcgattgctaccaacgcttgggccgtcgtgcgacgatccacttgttggac
gacatgatgcaaacgggtttccgcgaatcgacgcgaagtggtttgtcgttcgcgacggat
gacttggtgacgccggacaccaagacggacttcatcaagaaggccgaaaaagaagtcatg
aagctgaagaagtcgtacgaacgcgggctgatgaccggggccgaacgatacaaccacgtg
ctggacgaatggacgtcggctcgcgagttgatcaccacggacatgatgcaggcgatgaag
aacgacatccgcgaaggcggctggtacatcaacccggtgtacttgatgtcgcactcgggt
gctcggggcggtatcgaacagatccgtcaattggccggtatgcgtggtttgatggcgaag
ccaaccggcgaaatcatcgaaacacctattaaggctaacttccgcgaaggcctgtcggtg
ttggaatacttctcgtcgacgcacggtgctcgaaagggtctggccgatacggcactgaag
acagccgactcggggtacctgactcggaaactggccgacgtggcacagaacgtggtcatc
acgatgaacgactgtggcaccacccaagggatcaccaagggtgttgtctaccgcggcgaa
aaggtcgaagtcagtttggttgattcgatcaatggtcgggtcagtcgccaatcgatcgtg
aacccagtgaccgacgaagtgatcgttcgcgagaacgaaatgatcactccggacatcgct
cgtaacatcgaaagcatggggctggaaaagatccaggttcggactccgatgacctgcgac
gctccgctaggggtttgccgttgctgttacgggatggacatgtcgaccggtacgttggtc
gaagagggcatggccgtcggaatcatcgctgcccaatcgattggtgaacccggaactcag
ttgaccatgcgtacgttccacattggtggatcggtgaataagcagtcggttgaatcggac
atcaagagcaagcgttccggcgaagttcgtctgacccggatgcgtgcggttgaaaacacc
gagggtgtgccaatcgtgctgaaccgcaacggtgaaatcgcgttggtcgacgaccgtggt
cgcgaaatcgaatcctacccagtgccgaccggtgctgcgattcgtgtcaaagaaggcgaa
aaagtcaacgaaggcaccgtgctttgcgaatggaacccgtattcgattccgattctgtcg
gaagtcaacgggaagctgcgtttcgaagacatcgtcgaaggcgaaacgatgcgtgtcgaa
cgtgaagccagcggcaacgttcgcatgctgatcatggatcacaagggtgacctgcaccca
caaatggtggtcgaagacgccgacggcaaggctttgcacgtcgaatacctgccggaacgt
gccatgatcatcgccaagggtggcgacatgatcgtcgccggtacggtgttggctgaaatg
cctcgtgaaggtggtggtgtgtcggacatcaccggtggtctgcctcgtgtgaccgagatt
ttcgaagctcggaagcccaaggatccagccgttatcgccgaagtcgacggtgaagtcgaa
atcttggccgaacgcaaacgtggcaagcgaacgattatcgtccgcagcgaatcggggatc
gaacgcgaacacttggtgccgcacgggaagcacttccaagtgcacagtggtgacttcgtg
aaggctggtcaagctttggtcgaaggcccattggtcccgcacgacatcctgcgtgtttcg
ggcgaagaagccgttcagcagtacttgctgcacgaaattcaacaggtttaccaatcgcag
aaggtcgaaattaacgacaagcactgcgaaatcatcatcgcccggatgcttcgtaaggtg
aagatcgaatcggccggtgacaccaacctgttgcccggcagcgtgatggaccggttccac
ttccgccaagccaacgacgaactcgccaagtgcttgcgagtcgtgaagcctggggcaagt
gatttccacgaaggtcagatcattcccaaggaagtgttcgagcaaaccaacgctgaaatc
gaagcgatgggcggagaccctgccaagggcaaacggcccaagagtgcgaccgctagtact
cagttgctagggatcaccaaggctgccgttcagtcgaacagtttcatctcggcagcgtcg
ttccaagaaaccaccaaggtgttgaccgaagcggcattggccggcaaggtcgacaagttg
gttggtttgaaggaaaacgtcatcctggggcacttgatcccggccggtaccggtttccga
atcttccaagaatcggaagtcaactaccgccgcgaagcactcgaggaactggccagtgca
cctgtccagagcctggaagaaagcttcccgctgttgaatgctgatgaaggtgcggctcca
tcgcctgcatcaccatcgccagccgcagagatgccagctgccgaagcacccgccgatatg
cctagcgatcaaacgctggaccagttgttgggtggcggacaggatcctgcctaa
DBGET
integrated database retrieval system
