Rubripirellula lacrimiformis: K227x_52270
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Entry
K227x_52270 CDS
T07352
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rlc
Rubripirellula lacrimiformis
Pathway
rlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K227x_52270 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlc03019
]
K227x_52270 (rhlE)
Enzymes [BR:
rlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K227x_52270 (rhlE)
Messenger RNA biogenesis [BR:
rlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K227x_52270 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
QDT06811
UniProt:
A0A517NI49
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All DBs
Position
complement(6892493..6893929)
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AA seq
478 aa
AA seq
DB search
MNHFEEIDLIAPIKRALADENYVTPTPIQAQTIPAAITGCDVLGCAQTGTGKTAAFALPI
LNRLGKQNRKPVPNQPAALILAPTRELAIQIGESFATYGKHLRVKTALVYGGVNQNNQIR
AMQRGVHVLVATPGRLLDLMNQGHINLSRLDVFVLDEADRMLDMGFLPDLKRIIQELPED
RQSLFFSATMPPKIVDLSQRLLLNPVTVTVKPKKSTAQLIDQQVVFCERGDKQTLLKDLV
RADDAERVIVFTRTKRGANTVADKLEKAGISSAAIHGNKSQNARQRTLDAFRKNKIHVLV
ATDVAARGIDIDGVTHVINYDLPTEPESYVHRIGRTGRAEASGVAISFCTSAERDDLRAI
EQLIGKKVPLAPNQPKPTPGGSRDEVRGSGGRPSKPRGGPRSRNRSARPAGKSSGPKMSG
NPVAATGGAGTAVAAKPRRSQKRKAGFGVGIMDGEAVATATRAPRPKGSGRKPRPQQG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
ttgaaccattttgaagaaatcgacctgatcgctcccatcaaacgagcgctggccgacgaa
aattacgttacccctacaccgatccaagcgcaaacgatccccgccgccatcactggttgc
gacgtccttggatgtgcccaaacaggcaccggaaaaacggccgcattcgcactcccgatc
ctgaaccggcttggcaaacagaaccgcaagccggttcccaaccagcccgccgccttgatt
ttggcaccgacccgcgagttggcgatccaaatcggcgaaagctttgcgacctatggcaaa
caccttcgtgtgaagaccgctttggtctacggcggagtgaatcagaacaatcaaatccga
gcgatgcagcgtggcgttcacgtcctggttgctaccccgggtcgcttgttggacctgatg
aatcagggccacatcaatctaagccgactggacgtctttgtcttggacgaagccgaccgc
atgttggacatgggtttcttgcctgatctgaagcggatcattcaggaacttcccgaagac
cgtcagtctctgttcttctcggcaacgatgccaccgaagatcgttgatctttcacagcga
ttgctgctgaatccggtgaccgtgaccgtcaagccgaagaagtcgactgcacagttgatt
gatcaacaggtcgttttctgcgaacgcggcgacaaacagactttgttgaaagacttggtc
cgtgcggatgacgccgaacgagtgatcgtgttcacacgcaccaaacgcggtgccaacacg
gttgccgacaaattggaaaaagccgggatctcctcggccgctatccacggcaataaatcg
caaaatgcacgtcagcggacgctggacgcatttcgtaagaacaagattcacgtcttggtc
gccaccgacgttgccgctcgcggtatcgacatcgatggtgtcacccacgtgatcaactat
gacctgccaaccgaaccggaaagctatgtgcaccggattggacgaaccggtcgtgcggaa
gcatcgggcgttgcaatttcattttgcacgtctgccgaacgggatgatctgcgagcgatc
gagcaattgatcggcaagaaagttccgctagctccgaaccaacccaagccgacgccaggt
ggatctcgtgatgaggttcgtggaagcggtggtcgtccatcgaagcctcgtggtggccca
cgcagtcggaaccgatcagctcggccggccggtaaatccagcggtcctaaaatgtccggc
aaccccgtcgcagcgacgggcggagcgggaaccgcggtggccgccaagccacgtcgcagc
caaaaacgaaaagccggctttggtgtcggaatcatggacggggaagcggtcgccacggca
acacgcgctcctcgccccaaaggttccggccgaaagccacgcccccaacagggctag
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