KEGG   Rubripirellula lacrimiformis: K227x_52270
Entry
K227x_52270       CDS       T07352                                 
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
rlc  Rubripirellula lacrimiformis
Pathway
rlc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rlc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K227x_52270 (rhlE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rlc03019]
    K227x_52270 (rhlE)
Enzymes [BR:rlc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     K227x_52270 (rhlE)
Messenger RNA biogenesis [BR:rlc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     K227x_52270 (rhlE)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Utp25_C Cas3-like_C_2 ERCC3_RAD25_C AAA_22 CMS1 HEM4
Other DBs
NCBI-ProteinID: QDT06811
UniProt: A0A517NI49
LinkDB
Position
complement(6892493..6893929)
AA seq 478 aa
MNHFEEIDLIAPIKRALADENYVTPTPIQAQTIPAAITGCDVLGCAQTGTGKTAAFALPI
LNRLGKQNRKPVPNQPAALILAPTRELAIQIGESFATYGKHLRVKTALVYGGVNQNNQIR
AMQRGVHVLVATPGRLLDLMNQGHINLSRLDVFVLDEADRMLDMGFLPDLKRIIQELPED
RQSLFFSATMPPKIVDLSQRLLLNPVTVTVKPKKSTAQLIDQQVVFCERGDKQTLLKDLV
RADDAERVIVFTRTKRGANTVADKLEKAGISSAAIHGNKSQNARQRTLDAFRKNKIHVLV
ATDVAARGIDIDGVTHVINYDLPTEPESYVHRIGRTGRAEASGVAISFCTSAERDDLRAI
EQLIGKKVPLAPNQPKPTPGGSRDEVRGSGGRPSKPRGGPRSRNRSARPAGKSSGPKMSG
NPVAATGGAGTAVAAKPRRSQKRKAGFGVGIMDGEAVATATRAPRPKGSGRKPRPQQG
NT seq 1437 nt   +upstreamnt  +downstreamnt
ttgaaccattttgaagaaatcgacctgatcgctcccatcaaacgagcgctggccgacgaa
aattacgttacccctacaccgatccaagcgcaaacgatccccgccgccatcactggttgc
gacgtccttggatgtgcccaaacaggcaccggaaaaacggccgcattcgcactcccgatc
ctgaaccggcttggcaaacagaaccgcaagccggttcccaaccagcccgccgccttgatt
ttggcaccgacccgcgagttggcgatccaaatcggcgaaagctttgcgacctatggcaaa
caccttcgtgtgaagaccgctttggtctacggcggagtgaatcagaacaatcaaatccga
gcgatgcagcgtggcgttcacgtcctggttgctaccccgggtcgcttgttggacctgatg
aatcagggccacatcaatctaagccgactggacgtctttgtcttggacgaagccgaccgc
atgttggacatgggtttcttgcctgatctgaagcggatcattcaggaacttcccgaagac
cgtcagtctctgttcttctcggcaacgatgccaccgaagatcgttgatctttcacagcga
ttgctgctgaatccggtgaccgtgaccgtcaagccgaagaagtcgactgcacagttgatt
gatcaacaggtcgttttctgcgaacgcggcgacaaacagactttgttgaaagacttggtc
cgtgcggatgacgccgaacgagtgatcgtgttcacacgcaccaaacgcggtgccaacacg
gttgccgacaaattggaaaaagccgggatctcctcggccgctatccacggcaataaatcg
caaaatgcacgtcagcggacgctggacgcatttcgtaagaacaagattcacgtcttggtc
gccaccgacgttgccgctcgcggtatcgacatcgatggtgtcacccacgtgatcaactat
gacctgccaaccgaaccggaaagctatgtgcaccggattggacgaaccggtcgtgcggaa
gcatcgggcgttgcaatttcattttgcacgtctgccgaacgggatgatctgcgagcgatc
gagcaattgatcggcaagaaagttccgctagctccgaaccaacccaagccgacgccaggt
ggatctcgtgatgaggttcgtggaagcggtggtcgtccatcgaagcctcgtggtggccca
cgcagtcggaaccgatcagctcggccggccggtaaatccagcggtcctaaaatgtccggc
aaccccgtcgcagcgacgggcggagcgggaaccgcggtggccgccaagccacgtcgcagc
caaaaacgaaaagccggctttggtgtcggaatcatggacggggaagcggtcgccacggca
acacgcgctcctcgccccaaaggttccggccgaaagccacgcccccaacagggctag

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