Rhizobium johnstonii: RL0026
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Entry
RL0026 CDS
T00402
Name
(GenBank) putative ATP-dependent UvrD family DNA helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
rle
Rhizobium johnstonii
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rle03400
]
RL0026
Enzymes [BR:
rle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RL0026
DNA repair and recombination proteins [BR:
rle03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RL0026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_19
DEAD
AAA_30
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
CAK05514
UniProt:
Q1MND1
LinkDB
All DBs
Position
complement(22599..26150)
Genome browser
AA seq
1183 aa
AA seq
DB search
MSDVTALPNDDDPGAWIGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLSGA
RPSAILCLTYTKAAASEMSNRVFERLAEWVVLDDEDLSRRITQIEGMAPDGLKLAEARRL
FAKALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDRAAVALLSDARRALLTAT
APDEDSALAEAFAYVLNLGDESGLENLLGDIVANRNAIRRFTAAAEQQGGVEMVLRKRLG
LAVGDTEDRIEAQYWPLPELSGSVLELYLSLADQKGGAKAQEVAYGLRLAGRERDDARRA
QFLEKIFLTVKGEPKADSQFFVKAMLAEAPQLAEAIAIARAHVAASRDRLKLMRMYGATH
AALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGIDHILVDE
AQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFSEESDRT
RRRVSDSGQSFSSVRLPLSFRSTADVLEAVDHIFKTPENARGLSALGEPVVHRSSRIGHP
GAVDLWEMIAPEAVVKEEDWTAPFDATPESAPAAILARRIAHSIGTLVGRETIVDKGKER
LIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHIAVQDLLALGRFLLLP
EDDLSLAAVLKSPLFDLSEDDIFAIAALRGDNESFWSHLRSFAADGTELFRAAVERLELF
LRQSRSLSVHDFYARVLGSYGGRRQFLARLGTEVSDILDEFLTFTLDHESSGLPGLQSFI
STLELEAPVMKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAFTHTHLPKLRLIET
RPDEPPMPVWVPVSDLANSLTQDDAARIQMLAEEEYRRLLYVAMTRAADRLVVCGYRGVR
VNNDTWHMMISTALHDDHPHVEATTFSGSDGEWPGIKWRVPRVERSFERIDRSQERGSEE
TLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLLVVSPLFGEKEHSDRSLEKGRLIH
RMLQALPEIPLAERPDAASRYAERAARFWPEVERRKLVDSVLKLLDEEGLQAVLGAQAQP
EVSIMGTLTLEDRRYAVSGRIDRLAVLADRVVILDYKTNRVPPATEEAIPFAHRAQLAIY
REILTPLYPDKLIDCMLVYTENASLYTLSEKALGLALAAVKTK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgtgaccgcccttcccaacgatgacgatccgggcgcctggatcggctggacg
acgatccagcaggcgattgcctccgatccgctgcgttcagcatgggtctcggccaatgcc
ggttccggcaagacgcatgtgctgacacagcgcgtcatccggctgctgctatcaggtgcg
cggccttccgccattttatgcctcacctacaccaaggccgcggcgtcggaaatgtcgaac
cgcgtcttcgaacggctggcggaatgggtggtgcttgacgatgaggacctcagccggcgc
atcacgcagatcgaaggcatggctcccgacggactgaagcttgccgaggctcgccggctg
tttgccaaggcgctggaaacaccaggcggactgaagatccagacgatccatgccttttgc
gaggcactgctgcatcagttcccgctggaagccaacgttgccgggcatttctcggttctc
gacgatcgcgcggcggtggcgctgctttccgatgcgcgccgggcgctgttgacggcaacc
gcacctgacgaggacagcgctcttgccgaggcattcgcctacgtgctcaatctcggcgac
gaatccggactggagaacctgctcggcgacatcgtcgccaaccgcaacgccattcgtcgt
ttcacggcggcggccgaacagcagggcggcgtggaaatggtcctgcgcaaaaggctcggc
cttgccgtcggcgacacggaagacaggatcgaggcacaatattggcctttgccggagctt
tcgggcagcgtgttagagctttatctctcgcttgccgaccagaagggcggtgcgaaggcg
caggaggttgcctatggcctcaggctcgccgggcgggagcgcgatgacgcaaggcgcgcg
caatttctcgagaaaatctttctgaccgtgaagggcgagcccaaggcggactcgcaattc
ttcgtcaaggccatgcttgccgaggcaccgcagctggcggaggccatcgccattgcccgc
gcgcatgtcgcagcaagccgcgaccggctgaaactgatgcggatgtacggcgccacgcat
gcggcgctcgtgctcgccgatcggctgaatcacgactatgaggagttgaagaagcagcgc
agccagctcgatttcgaggacctgatcacccgcaccgccgacctcctgaccaaaagtggc
gtcggtccctggatccactacaagctcgatcggggcatcgaccatatcctcgtcgacgag
gcgcaggataccagcccgatccagtggagcgtcatccagtcgctcgccgaagatttcttc
tccggcgaaagcgcccggccgatcgtgcgcacgttgtttgccgtcggcgacgaaaagcag
tcgatctattccttccagggggcgcggcccgagcgtttttccgaggagagcgaccggacg
cggcggcgcgtttccgatagcgggcagagtttttcctccgtgcggctgccgctgtcgttc
cgctcgaccgccgacgtgctcgaggcggtcgaccacattttcaagacacccgagaacgcg
cgcggcctcagcgcgctcggcgaaccggtcgtgcatcgttccagccgcatcgggcatccc
ggcgccgtcgatctctgggagatgattgcgccggaagcggtggtgaaggaggaggactgg
acggcgcccttcgatgcgacgccggaaagcgcgccggccgcaatcctcgcgcggcggatc
gcccattcgatcggcacgctcgtcggccgcgaaacgatcgtcgacaaaggcaaggagcgc
ctgatcgaggccggcgacattctggtgctggtgcgcaagcgcgacgccttcgtcaatgcg
ttgacgcgggcgttgaagcgccgcggcgatattcccgtcgccggtgcggacaggctggtg
ctgaccagccatatcgccgtgcaggatctgctggcgctcggccgtttcctgcttctgccg
gaagacgatctttcgctcgccgccgtgctcaagagcccgcttttcgatctctcggaggac
gacatctttgcgatcgccgcgttgcgcggcgacaatgaaagcttctggagccatctccga
agcttcgccgccgacggcaccgaacttttccgcgctgccgtcgagcggctggagctattt
ctccggcagtccaggagcctgtcggttcacgatttctatgcacgcgtgctgggtagctat
ggcgggcggcggcaattccttgcccgtctcggcaccgaggtcagcgatatcctcgacgaa
ttcctgaccttcacgctcgaccatgagagctccggccttcccggtctgcaatccttcatc
tcgacgctggaactcgaagccccggtaatgaagcgcgagcaggacaaggggcgcaacgag
gtacggatcatgacggtgcatgcctccaagggtcttgaagcaccgatcgtttttctcgtc
gacggcggttcgaaggccttcacccatacgcatctgccgaagcttcgcctgatcgagacc
cgccccgacgagccgccgatgcccgtctgggttcctgtctccgatctcgccaattcgctg
acccaggacgatgccgcacgtatccagatgctggcggaagaggaatatcgccggttgctc
tatgtcgccatgacgcgtgccgccgaccggctggtcgtctgcggctatcgtggcgtgcgt
gtgaacaacgacacctggcatatgatgatttcaacggcactgcacgacgaccatccgcat
gtggaggcgaccacattctccggttccgatggggaatggccgggcatcaaatggcgcgtg
ccgcgggtggaacgaagctttgagcgtatcgatcgcagccaagagcgcggcagtgaggag
accttgcccgacggcctgttgcggccattgccgccgcaggctgagctgccccggccgctc
agcccctccggcgccgggacgattatcgatgaagacgagggcggcctgctggtcgtctcg
ccgctgttcggcgagaaggagcacagcgatcgttcgctggagaaaggcaggctgatccat
cgcatgctgcaggcgcttcccgaaattccgcttgccgagcgacctgatgcggcgagccgc
tatgccgaacgggcggctcgattctggccggaagtcgagcggcgcaagcttgtcgattcg
gttctgaaactattggacgaggaaggtctgcaggctgttctcggtgcacaggcccagccc
gaggtctcgatcatgggaacattgacgctcgaagatcggcgctatgccgtctccggccgc
atcgaccggcttgccgtccttgccgatcgcgtcgtcattctcgactacaagaccaatcgg
gtgccgccggcaacagaggaggccatccccttcgcgcaccgggcgcagctggcgatctat
cgcgagatcctgacgccgctctatcctgataagcttatcgattgcatgcttgtctatacc
gagaacgcttcgctctacacgctgagcgaaaaggcgctcggtttggcgcttgcagcggtc
aagacaaagtga
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